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Thank you for developing this cool package. I'm asking regarding the availability to download the previous version of Pando (v0.5.1) that is hopefully compatible with Seurat V4 object. The reason I want to stick to Seurat V4 is to keep my analysis consistent.
I tried to customize the fit_grn_models.GRNData function by replacing LayerData() to GetAssayData() on my end, but couldn't get it working. Error I got is as below:
Selecting candidate regulatory regions near genes Preparing model input Fitting models for 7896 target genes Error in { : task 9 failed - "unused argument (sparse = TRUE)"
Thank you and please kindly let me know if you have suggestions to work around this.
Best,
Yingying
The text was updated successfully, but these errors were encountered:
Hello,
Thank you for developing this cool package. I'm asking regarding the availability to download the previous version of Pando (v0.5.1) that is hopefully compatible with Seurat V4 object. The reason I want to stick to Seurat V4 is to keep my analysis consistent.
I tried to customize the fit_grn_models.GRNData function by replacing LayerData() to GetAssayData() on my end, but couldn't get it working. Error I got is as below:
Selecting candidate regulatory regions near genes Preparing model input Fitting models for 7896 target genes Error in { : task 9 failed - "unused argument (sparse = TRUE)"Thank you and please kindly let me know if you have suggestions to work around this.
Best,
Yingying
The text was updated successfully, but these errors were encountered: