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pip install on server didn't seem to properly install yirgacheffe #2

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robinmessage opened this issue Sep 4, 2023 · 1 comment
Open

pip install on server didn't seem to properly install yirgacheffe #2

robinmessage opened this issue Sep 4, 2023 · 1 comment

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@robinmessage
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I've cleaned up and run it again, and the output has a very suspicious "UNKNOWN" in it. The unknown wheel has your name on it but otherwise appears empty.

Output from running it again:

rhm31@kinabalu:~/tmf-implementation$ pip install -r requirements.txt 
Defaulting to user installation because normal site-packages is not writeable
Collecting git+https://github.com/carboncredits/yirgacheffe@b4a3420a9f050e97f0fc34b4425a1e89aed584cb (from -r requirements.txt (line 7))
  Cloning https://github.com/carboncredits/yirgacheffe (to revision b4a3420a9f050e97f0fc34b4425a1e89aed584cb) to /tmp/pip-req-build-doslypxy
  Running command git clone --filter=blob:none --quiet https://github.com/carboncredits/yirgacheffe /tmp/pip-req-build-doslypxy
  Running command git rev-parse -q --verify 'sha^b4a3420a9f050e97f0fc34b4425a1e89aed584cb'
  Running command git fetch -q https://github.com/carboncredits/yirgacheffe b4a3420a9f050e97f0fc34b4425a1e89aed584cb
  Resolved https://github.com/carboncredits/yirgacheffe to commit b4a3420a9f050e97f0fc34b4425a1e89aed584cb
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Preparing metadata (pyproject.toml) ... done
Collecting git+https://github.com/carboncredits/biomass-recovery@170630d50e42083c545643928747d67aa7245291 (from -r requirements.txt (line 8))
  Cloning https://github.com/carboncredits/biomass-recovery (to revision 170630d50e42083c545643928747d67aa7245291) to /tmp/pip-req-build-dnw78z3r
  Running command git clone --filter=blob:none --quiet https://github.com/carboncredits/biomass-recovery /tmp/pip-req-build-dnw78z3r
  Running command git rev-parse -q --verify 'sha^170630d50e42083c545643928747d67aa7245291'
  Running command git fetch -q https://github.com/carboncredits/biomass-recovery 170630d50e42083c545643928747d67aa7245291
  Running command git checkout -q 170630d50e42083c545643928747d67aa7245291
  Resolved https://github.com/carboncredits/biomass-recovery to commit 170630d50e42083c545643928747d67aa7245291
  Preparing metadata (setup.py) ... done
Collecting numpy
  Using cached numpy-1.25.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
Collecting gdal[numpy]<3.7
  Using cached GDAL-3.6.4-cp310-cp310-linux_x86_64.whl
Requirement already satisfied: requests in /usr/lib/python3/dist-packages (from -r requirements.txt (line 3)) (2.25.1)
Collecting pandas
  Using cached pandas-2.1.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.7 MB)
Collecting geopandas
  Using cached geopandas-0.13.2-py3-none-any.whl (1.1 MB)
Collecting scipy
  Using cached scipy-1.11.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (36.3 MB)
Collecting mypy
  Using cached mypy-1.5.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.1 MB)
Collecting pytest
  Using cached pytest-7.4.1-py3-none-any.whl (324 kB)
Collecting pylint
  Using cached pylint-2.17.5-py3-none-any.whl (536 kB)
Collecting pandas-stubs
  Using cached pandas_stubs-2.0.3.230814-py3-none-any.whl (153 kB)
Collecting types-requests
  Using cached types_requests-2.31.0.2-py3-none-any.whl (14 kB)
Collecting tzdata>=2022.1
  Using cached tzdata-2023.3-py2.py3-none-any.whl (341 kB)
Collecting python-dateutil>=2.8.2
  Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB)
Collecting pytz>=2020.1
  Using cached pytz-2023.3-py2.py3-none-any.whl (502 kB)
Collecting shapely>=1.7.1
  Using cached shapely-2.0.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.3 MB)
Collecting pyproj>=3.0.1
  Using cached pyproj-3.6.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.9 MB)
Collecting packaging
  Using cached packaging-23.1-py3-none-any.whl (48 kB)
Collecting fiona>=1.8.19
  Using cached Fiona-1.9.4.post1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB)
Collecting geoalchemy2
  Using cached GeoAlchemy2-0.14.1-py3-none-any.whl (54 kB)
Collecting h5py
  Using cached h5py-3.9.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.8 MB)
Collecting hvplot
  Using cached hvplot-0.8.4-py2.py3-none-any.whl (3.2 MB)
Collecting psutil
  Using cached psutil-5.9.5-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (282 kB)
Collecting psycopg2
  Using cached psycopg2-2.9.7-cp310-cp310-linux_x86_64.whl
Collecting pyarrow
  Using cached pyarrow-13.0.0-cp310-cp310-manylinux_2_28_x86_64.whl (40.0 MB)
Collecting pylr2
  Using cached pylr2-0.1.0-py3-none-any.whl
Collecting pyspark
  Using cached pyspark-3.4.1-py2.py3-none-any.whl
Collecting python-dotenv
  Using cached python_dotenv-1.0.0-py3-none-any.whl (19 kB)
Collecting rioxarray
  Using cached rioxarray-0.15.0-py3-none-any.whl (53 kB)
Collecting sqlalchemy
  Using cached SQLAlchemy-2.0.20-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.0 MB)
Collecting statsmodels
  Using cached statsmodels-0.14.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (10.1 MB)
Collecting tqdm
  Using cached tqdm-4.66.1-py3-none-any.whl (78 kB)
Requirement already satisfied: urllib3<2.0 in /usr/lib/python3/dist-packages (from biomassrecovery==0.0.3->-r requirements.txt (line 8)) (1.26.5)
Collecting utm
  Using cached utm-0.7.0-py3-none-any.whl
Collecting xarray
  Using cached xarray-2023.8.0-py3-none-any.whl (1.0 MB)
Collecting tomli>=1.1.0
  Using cached tomli-2.0.1-py3-none-any.whl (12 kB)
Collecting mypy-extensions>=1.0.0
  Using cached mypy_extensions-1.0.0-py3-none-any.whl (4.7 kB)
Collecting typing-extensions>=4.1.0
  Using cached typing_extensions-4.7.1-py3-none-any.whl (33 kB)
Collecting iniconfig
  Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB)
Collecting exceptiongroup>=1.0.0rc8
  Using cached exceptiongroup-1.1.3-py3-none-any.whl (14 kB)
Collecting pluggy<2.0,>=0.12
  Using cached pluggy-1.3.0-py3-none-any.whl (18 kB)
Requirement already satisfied: platformdirs>=2.2.0 in /usr/lib/python3/dist-packages (from pylint->-r requirements.txt (line 13)) (2.5.1)
Collecting tomlkit>=0.10.1
  Using cached tomlkit-0.12.1-py3-none-any.whl (37 kB)
Collecting mccabe<0.8,>=0.6
  Using cached mccabe-0.7.0-py2.py3-none-any.whl (7.3 kB)
Collecting dill>=0.2
  Using cached dill-0.3.7-py3-none-any.whl (115 kB)
Collecting astroid<=2.17.0-dev0,>=2.15.6
  Using cached astroid-2.15.6-py3-none-any.whl (278 kB)
Collecting isort<6,>=4.2.5
  Using cached isort-5.12.0-py3-none-any.whl (91 kB)
Collecting types-pytz>=2022.1.1
  Using cached types_pytz-2023.3.0.1-py3-none-any.whl (4.9 kB)
Collecting types-urllib3
  Using cached types_urllib3-1.26.25.14-py3-none-any.whl (15 kB)
Collecting lazy-object-proxy>=1.4.0
  Using cached lazy_object_proxy-1.9.0-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (63 kB)
Collecting wrapt<2,>=1.11
  Using cached wrapt-1.15.0-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (78 kB)
Collecting attrs>=19.2.0
  Using cached attrs-23.1.0-py3-none-any.whl (61 kB)
Collecting click-plugins>=1.0
  Using cached click_plugins-1.1.1-py2.py3-none-any.whl (7.5 kB)
Requirement already satisfied: certifi in /usr/lib/python3/dist-packages (from fiona>=1.8.19->geopandas->-r requirements.txt (line 5)) (2020.6.20)
Collecting click~=8.0
  Using cached click-8.1.7-py3-none-any.whl (97 kB)
Requirement already satisfied: six in /usr/lib/python3/dist-packages (from fiona>=1.8.19->geopandas->-r requirements.txt (line 5)) (1.16.0)
Collecting cligj>=0.5
  Using cached cligj-0.7.2-py3-none-any.whl (7.1 kB)
Collecting greenlet!=0.4.17
  Using cached greenlet-2.0.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (613 kB)
Collecting bokeh>=1.0.0
  Using cached bokeh-3.2.2-py3-none-any.whl (7.8 MB)
Collecting panel>=0.11.0
  Using cached panel-1.2.2-py2.py3-none-any.whl (20.0 MB)
Collecting param>=1.9.0
  Using cached param-1.13.0-py2.py3-none-any.whl (87 kB)
Collecting holoviews>=1.11.0
  Using cached holoviews-1.17.1-py2.py3-none-any.whl (4.3 MB)
Collecting colorcet>=2
  Using cached colorcet-3.0.1-py2.py3-none-any.whl (1.7 MB)
Collecting py4j==0.10.9.7
  Using cached py4j-0.10.9.7-py2.py3-none-any.whl (200 kB)
Collecting rasterio>=1.2
  Using cached rasterio-1.3.8-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (21.3 MB)
Collecting patsy>=0.5.2
  Using cached patsy-0.5.3-py2.py3-none-any.whl (233 kB)
Requirement already satisfied: PyYAML>=3.10 in /usr/lib/python3/dist-packages (from bokeh>=1.0.0->hvplot->biomassrecovery==0.0.3->-r requirements.txt (line 8)) (5.4.1)
Collecting Jinja2>=2.9
  Using cached Jinja2-3.1.2-py3-none-any.whl (133 kB)
Collecting tornado>=5.1
  Using cached tornado-6.3.3-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (427 kB)
Collecting contourpy>=1
  Using cached contourpy-1.1.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (300 kB)
Collecting pillow>=7.1.0
  Using cached Pillow-10.0.0-cp310-cp310-manylinux_2_28_x86_64.whl (3.4 MB)
Collecting xyzservices>=2021.09.1
  Using cached xyzservices-2023.7.0-py3-none-any.whl (56 kB)
Collecting pyct>=0.4.4
  Using cached pyct-0.5.0-py2.py3-none-any.whl (15 kB)
Collecting pyviz-comms>=0.7.4
  Using cached pyviz_comms-3.0.0-py3-none-any.whl (82 kB)
Collecting markdown
  Using cached Markdown-3.4.4-py3-none-any.whl (94 kB)
Collecting linkify-it-py
  Using cached linkify_it_py-2.0.2-py3-none-any.whl (19 kB)
Collecting bleach
  Using cached bleach-6.0.0-py3-none-any.whl (162 kB)
Collecting mdit-py-plugins
  Using cached mdit_py_plugins-0.4.0-py3-none-any.whl (54 kB)
Collecting markdown-it-py
  Using cached markdown_it_py-3.0.0-py3-none-any.whl (87 kB)
Collecting snuggs>=1.4.1
  Using cached snuggs-1.4.7-py3-none-any.whl (5.4 kB)
Requirement already satisfied: setuptools in /usr/lib/python3/dist-packages (from rasterio>=1.2->rioxarray->biomassrecovery==0.0.3->-r requirements.txt (line 8)) (59.6.0)
Collecting affine
  Using cached affine-2.4.0-py3-none-any.whl (15 kB)
Collecting MarkupSafe>=2.0
  Using cached MarkupSafe-2.1.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
Requirement already satisfied: pyparsing>=2.1.6 in /usr/lib/python3/dist-packages (from snuggs>=1.4.1->rasterio>=1.2->rioxarray->biomassrecovery==0.0.3->-r requirements.txt (line 8)) (2.4.7)
Collecting webencodings
  Using cached webencodings-0.5.1-py2.py3-none-any.whl (11 kB)
Collecting uc-micro-py
  Using cached uc_micro_py-1.0.2-py3-none-any.whl (6.2 kB)
Collecting mdurl~=0.1
  Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB)
Building wheels for collected packages: UNKNOWN, biomassrecovery
  Building wheel for UNKNOWN (pyproject.toml) ... done
  Created wheel for UNKNOWN: filename=UNKNOWN-0.0.0-py3-none-any.whl size=1633 sha256=66c858b1122f90e57cd0d4aa7d8298406c46c04958a746012896f44831607c23
  Stored in directory: /home/rhm31/.cache/pip/wheels/7d/82/17/81ddcf774692739e654abe341f9698d3bea64c84f17932300c
  Building wheel for biomassrecovery (setup.py) ... done
  Created wheel for biomassrecovery: filename=biomassrecovery-0.0.3-py3-none-any.whl size=41351 sha256=efebdb893d9e36f4f5e480e2f58546846c9777aca2475a832affd20569d535f5
  Stored in directory: /home/rhm31/.cache/pip/wheels/33/5c/5d/584c3b90ab2d665afdbf06c30b14b71b9d13441cf0b0cc292f
Successfully built UNKNOWN biomassrecovery
Installing collected packages: webencodings, utm, UNKNOWN, types-urllib3, types-pytz, pytz, py4j, xyzservices, wrapt, uc-micro-py, tzdata, typing-extensions, types-requests, tqdm, tornado, tomlkit, tomli, python-dotenv, python-dateutil, pyspark, pyproj, psycopg2, psutil, pluggy, pillow, param, packaging, numpy, mypy-extensions, mdurl, mccabe, MarkupSafe, markdown, lazy-object-proxy, isort, iniconfig, greenlet, gdal, exceptiongroup, dill, click, bleach, attrs, affine, sqlalchemy, snuggs, shapely, scipy, pyviz-comms, pytest, pyct, pyarrow, patsy, pandas-stubs, pandas, mypy, markdown-it-py, linkify-it-py, Jinja2, h5py, contourpy, cligj, click-plugins, astroid, xarray, statsmodels, rasterio, pylint, mdit-py-plugins, geoalchemy2, fiona, colorcet, bokeh, rioxarray, pylr2, panel, geopandas, holoviews, hvplot, biomassrecovery
Successfully installed Jinja2-3.1.2 MarkupSafe-2.1.3 UNKNOWN-0.0.0 affine-2.4.0 astroid-2.15.6 attrs-23.1.0 biomassrecovery-0.0.3 bleach-6.0.0 bokeh-3.2.2 click-8.1.7 click-plugins-1.1.1 cligj-0.7.2 colorcet-3.0.1 contourpy-1.1.0 dill-0.3.7 exceptiongroup-1.1.3 fiona-1.9.4.post1 gdal-3.6.4 geoalchemy2-0.14.1 geopandas-0.13.2 greenlet-2.0.2 h5py-3.9.0 holoviews-1.17.1 hvplot-0.8.4 iniconfig-2.0.0 isort-5.12.0 lazy-object-proxy-1.9.0 linkify-it-py-2.0.2 markdown-3.4.4 markdown-it-py-3.0.0 mccabe-0.7.0 mdit-py-plugins-0.4.0 mdurl-0.1.2 mypy-1.5.1 mypy-extensions-1.0.0 numpy-1.25.2 packaging-23.1 pandas-2.1.0 pandas-stubs-2.0.3.230814 panel-1.2.2 param-1.13.0 patsy-0.5.3 pillow-10.0.0 pluggy-1.3.0 psutil-5.9.5 psycopg2-2.9.7 py4j-0.10.9.7 pyarrow-13.0.0 pyct-0.5.0 pylint-2.17.5 pylr2-0.1.0 pyproj-3.6.0 pyspark-3.4.1 pytest-7.4.1 python-dateutil-2.8.2 python-dotenv-1.0.0 pytz-2023.3 pyviz-comms-3.0.0 rasterio-1.3.8 rioxarray-0.15.0 scipy-1.11.2 shapely-2.0.1 snuggs-1.4.7 sqlalchemy-2.0.20 statsmodels-0.14.0 tomli-2.0.1 tomlkit-0.12.1 tornado-6.3.3 tqdm-4.66.1 types-pytz-2023.3.0.1 types-requests-2.31.0.2 types-urllib3-1.26.25.14 typing-extensions-4.7.1 tzdata-2023.3 uc-micro-py-1.0.2 utm-0.7.0 webencodings-0.5.1 wrapt-1.15.0 xarray-2023.8.0 xyzservices-2023.7.0
rhm31@kinabalu:~/tmf-implementation$ ll /home/rhm31/.cache/pip/wheels/7d/82/17/81ddcf774692739e654abe341f9698d3bea64c84f17932300c/
total 12
drwxrwxr-x 2 rhm31 rhm31 4096 Sep  4 09:24 ./
drwxrwxr-x 3 rhm31 rhm31 4096 Sep  4 09:24 ../
-rw-rw-r-- 1 rhm31 rhm31 1633 Sep  4 10:52 UNKNOWN-0.0.0-py3-none-any.whl
rhm31@kinabalu:~/tmf-implementation$ unzip -p /home/rhm31/.cache/pip/wheels/7d/82/17/81ddcf774692739e654abe341f9698d3bea64c84f17932300c/UNKNOWN-0.0.0-py3-none-any.whl
ISC License

Copyright 2022 Michael Dales <mwd24@cam.ac.uk>

Permission to use, copy, modify, and/or distribute this software for any purpose with or without fee is hereby granted, provided that the above copyright notice and this permission notice appear in all copies.

THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.Metadata-Version: 2.1
Name: UNKNOWN
Version: 0.0.0
Summary: UNKNOWN
Home-page: UNKNOWN
License: UNKNOWN
Platform: UNKNOWN
License-File: LICENSE

UNKNOWN

Wheel-Version: 1.0
Generator: bdist_wheel (0.37.1)
Root-Is-Purelib: true
Tag: py3-none-any


UNKNOWN-0.0.0.dist-info/LICENSE,sha256=dNSHwUCJr6axStTKDEdnJtfmDdFqlE3h1NPCveqPfnY,757
UNKNOWN-0.0.0.dist-info/METADATA,sha256=ikuncjmX09bWkFzGYAUjpVKacBjltJ_dqbpOK5N3MUE,154
UNKNOWN-0.0.0.dist-info/WHEEL,sha256=G16H4A3IeoQmnOrYV4ueZGKSjhipXx8zc8nu9FGlvMA,92
UNKNOWN-0.0.0.dist-info/top_level.txt,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
UNKNOWN-0.0.0.dist-info/RECORD,,
@robinmessage
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It works in a virtualenv, so maybe the lack of virtualenv is the problem somehow?

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