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For some reason it is not possible to install ndl2 with `devtools:install_github('quantling/ndl2').
ndl2
After installing devtools and the dependencies of ndl2 with:
sudo apt-get install r-cran-devtools sudo apt-get install libboost-filesystem-dev libboost-system-dev libboost-regex-dev libicu-dev
I still get an error message after running:
library(devtools) devtools::install_github('quantling/ndl2')
The error message is:
Downloading GitHub repo quantling/ndl2@HEAD ✔ checking for file ‘/tmp/RtmpFbrjVv/remotes1f67548ee37a1/quantling-ndl2-5f26ad0/DESCRIPTION’ ... ─ preparing ‘ndl2’: ✔ checking DESCRIPTION meta-information ... ─ cleaning src ─ checking for LF line-endings in source and make files and shell scripts ─ checking for empty or unneeded directories ─ looking to see if a ‘data/datalist’ file should be added ─ building ‘ndl2_0.1.1.tar.gz’ Installing package into ‘/home/tino/R/x86_64-pc-linux-gnu-library/4.2’ (as ‘lib’ is unspecified) * installing *source* package ‘ndl2’ ... ** using staged installation ** libs g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/tino/R/x86_64-pc-linux-gnu-library/4.2/Rcpp/include' -fopenmp -DUSING_RCPP=1 -Wall -fpic -g -O2 -ffile-prefix-map=/home/jranke/git/r-backports/bullseye/r-base-4.2.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c common/helper.cpp -o common/helper.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/tino/R/x86_64-pc-linux-gnu-library/4.2/Rcpp/include' -fopenmp -DUSING_RCPP=1 -Wall -fpic -g -O2 -ffile-prefix-map=/home/jranke/git/r-backports/bullseye/r-base-4.2.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c common/serialization.cpp -o common/serialization.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/tino/R/x86_64-pc-linux-gnu-library/4.2/Rcpp/include' -fopenmp -DUSING_RCPP=1 -Wall -fpic -g -O2 -ffile-prefix-map=/home/jranke/git/r-backports/bullseye/r-base-4.2.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c common/Exception.cpp -o common/Exception.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/tino/R/x86_64-pc-linux-gnu-library/4.2/Rcpp/include' -fopenmp -DUSING_RCPP=1 -Wall -fpic -g -O2 -ffile-prefix-map=/home/jranke/git/r-backports/bullseye/r-base-4.2.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c common/view_events.cpp -o common/view_events.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/tino/R/x86_64-pc-linux-gnu-library/4.2/Rcpp/include' -fopenmp -DUSING_RCPP=1 -Wall -fpic -g -O2 -ffile-prefix-map=/home/jranke/git/r-backports/bullseye/r-base-4.2.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c danks.cpp -o danks.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/tino/R/x86_64-pc-linux-gnu-library/4.2/Rcpp/include' -fopenmp -DUSING_RCPP=1 -Wall -fpic -g -O2 -ffile-prefix-map=/home/jranke/git/r-backports/bullseye/r-base-4.2.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c learning/rescorla_wagner.cpp -o learning/rescorla_wagner.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/tino/R/x86_64-pc-linux-gnu-library/4.2/Rcpp/include' -fopenmp -DUSING_RCPP=1 -Wall -fpic -g -O2 -ffile-prefix-map=/home/jranke/git/r-backports/bullseye/r-base-4.2.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c learning/file_management.cpp -o learning/file_management.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/tino/R/x86_64-pc-linux-gnu-library/4.2/Rcpp/include' -fopenmp -DUSING_RCPP=1 -Wall -fpic -g -O2 -ffile-prefix-map=/home/jranke/git/r-backports/bullseye/r-base-4.2.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c learning/util.cpp -o learning/util.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/tino/R/x86_64-pc-linux-gnu-library/4.2/Rcpp/include' -fopenmp -DUSING_RCPP=1 -Wall -fpic -g -O2 -ffile-prefix-map=/home/jranke/git/r-backports/bullseye/r-base-4.2.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c learning/matrix_io.cpp -o learning/matrix_io.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/tino/R/x86_64-pc-linux-gnu-library/4.2/Rcpp/include' -fopenmp -DUSING_RCPP=1 -Wall -fpic -g -O2 -ffile-prefix-map=/home/jranke/git/r-backports/bullseye/r-base-4.2.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c learning/events_manager.cpp -o learning/events_manager.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/tino/R/x86_64-pc-linux-gnu-library/4.2/Rcpp/include' -fopenmp -DUSING_RCPP=1 -Wall -fpic -g -O2 -ffile-prefix-map=/home/jranke/git/r-backports/bullseye/r-base-4.2.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c learning/r_wrapper.cpp -o learning/r_wrapper.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/tino/R/x86_64-pc-linux-gnu-library/4.2/Rcpp/include' -fopenmp -DUSING_RCPP=1 -Wall -fpic -g -O2 -ffile-prefix-map=/home/jranke/git/r-backports/bullseye/r-base-4.2.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c preprocessing/ndlpreproc.cpp -o preprocessing/ndlpreproc.o preprocessing/ndlpreproc.cpp: In function ‘std::string getFormattedTime(tm*)’: preprocessing/ndlpreproc.cpp:1539:31: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 8 and 15 [-Wformat-truncation=] 1539 | snprintf(buffer, 20, "%4d-%02d-%02d %02d:%02d:%02d", 1900+ptm->tm_year, | ^~~~ preprocessing/ndlpreproc.cpp:1539:26: note: directive argument in the range [-2147483647, 2147483647] 1539 | snprintf(buffer, 20, "%4d-%02d-%02d %02d:%02d:%02d", 1900+ptm->tm_year, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/10/cstdio:42, from preprocessing/ndlpreproc.cpp:10: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 20 and 72 bytes into a destination of size 20 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/tino/R/x86_64-pc-linux-gnu-library/4.2/Rcpp/include' -fopenmp -DUSING_RCPP=1 -Wall -fpic -g -O2 -ffile-prefix-map=/home/jranke/git/r-backports/bullseye/r-base-4.2.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c preprocessing/ndlOutBuffer.cpp -o preprocessing/ndlOutBuffer.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/tino/R/x86_64-pc-linux-gnu-library/4.2/Rcpp/include' -fopenmp -DUSING_RCPP=1 -Wall -fpic -g -O2 -ffile-prefix-map=/home/jranke/git/r-backports/bullseye/r-base-4.2.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c view_events_wrapper.cpp -o view_events_wrapper.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I'/home/tino/R/x86_64-pc-linux-gnu-library/4.2/Rcpp/include' -fopenmp -DUSING_RCPP=1 -Wall -fpic -g -O2 -ffile-prefix-map=/home/jranke/git/r-backports/bullseye/r-base-4.2.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c preprocessing_wrapper.cpp -o preprocessing_wrapper.o make: *** No rule to make target 'RcppExports.o', needed by 'ndl2.so'. Stop. ERROR: compilation failed for package ‘ndl2’ * removing ‘/home/tino/R/x86_64-pc-linux-gnu-library/4.2/ndl2’ Warning message: In i.p(...) : installation of package ‘/tmp/RtmpFbrjVv/file1f675655196fa/ndl2_0.1.1.tar.gz’ had non-zero exit status
The text was updated successfully, but these errors were encountered:
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For some reason it is not possible to install
ndl2
with `devtools:install_github('quantling/ndl2').After installing devtools and the dependencies of
ndl2
with:I still get an error message after running:
The error message is:
The text was updated successfully, but these errors were encountered: