::: {.content-hidden unless-format="html"} with plotly seems to end up in pdf output

[jmbuhr]

Bug description

There seems to be an issue with plotly inside of divs that normally shouldn't be run and displayed e.g. in the following qmd file:

---
title: "Untitled"
# prefer-html: true
format:
  html: default
  pdf: default
---

# Test

::: {.content-hidden when-format="html"}
Will not appear in HTML.
:::

This works:

::: {.content-hidden unless-format="html"}
Should appear in the html

```{r}
knitr::kable(mtcars, format = "html")
```
:::


The following fails with

> Error: Functions that produce HTML output found in document targeting pdf output.

::: {.content-hidden unless-format="html"}
Should appear in the html, but not in the pdf:

```{r}
library(tidyverse)
plt <- ggplot(mtcars, aes(mpg, disp)) +
  geom_point()

plotly::ggplotly(plt)
```

:::

or when forced through `prefer-html: true` with:

> LaTeX Error: Missing \begin{document}.
> 
> See the LaTeX manual or LaTeX Companion for explanation.
> Type  H <return>  for immediate help.
>  ...                                              
>                                                   
> l.78 <
>       script src="test_files/libs/htmlwidgets-1.5.4/htmlwidgets.js"></script> 

quarto version: 1.2.269

Checklist

• Please include a minimal, fully reproducible example in a single .qmd file? Please provide the whole file rather than the snippet you believe is causing the issue.
• Please format your issue so it is easier for us to read the bug report.
• Please document the RStudio IDE version you're running (if applicable), by providing the value displayed in the "About RStudio" main menu dialog?
• Please document the operating system you're running. If on Linux, please provide the specific distribution.

[cscheid]

The processing of content-hidden happens after the execution. It hides the content: it doesn't prevent it from executing. We should improve our documentation to clarify this situation, but that's currently not something that can be done with content-hidden and content-visible.

In knitr specifically, you can use knitr::is_html_output() to avoid execution.

[jmbuhr]

That makes sense. I think it was discussed at some point whether it is possible to prevent execution, but with independent engines it seems hard.

However, I still wonder about

Error: Functions that produce HTML output found in document targeting pdf output.

Because if we render to html and look at the intermediat markdown generated by knitr using keep-md: true we find:

::: {.content-hidden unless-format="html"}
(...)
::: {.cell-output-display}
```{=html}
(the plotly output)
```
:::
:::

which renders to pdf just fine with quarto.
(i.e. quarto render test.qmd -t html followed by quarto render test.md -t pdf)

So I think the safeguard in quarto to check for html-producing functions is overeager in this case.

[jmbuhr]

Interestingly, if I ignore this error with prefer-html: true things like

<script src="test_files/libs/htmlwidgets-1.5.4/htmlwidgets.js"></script>
<script src="test_files/libs/plotly-binding-4.10.0/plotly.js"></script>

end up raw in the .tex file, causing it to fail.

So, not using prefer-html and instead quarto render test.qmd -t html followed by quarto render test.md -t pdf works, but quarto render test.qmd -t pdf does not. It's a bit puzzling to me why it works in two steps but not in one. Maybe prefer-html does more than I thought.

[katossky]

Run into the same issue. Tried to deactivate all cells containing HTML within knitr directly, but HTML content is nevertheless detected and <script> tags injected into md, resulting into the same error as described here.

[cderv]

@jmbuhr @katossky just to add some explanation context as I am passing by:

• Using HTML widgets like plotly with knitr computation engine should do a screenshot to insert into PDF output. So no error should be thrown. This requires webshot2 or webshot R 📦 . Detail in Can't compile to PDF when including an R HTML widget #4225 (comment)

• prefer-html is not to be used with PDF output as it will effectively try to force insertion of HTML. I need to adapt the documentation. This is a R Markdown backported feature that should not be useful for Quarto.

• @katossky about

  Tried to deactivate all cells containing HTML within knitr directly, but HTML content is nevertheless detected and <script> tags
  injected into md, resulting into the same error as described here.

  I am reading 'within knitr directly' as using R code in a chunk - It may be something else. Can you open an new issue ?

  Thank you

[cderv]

FWIW this has been fixed already and not the OP example works ok.

No leakage anymore in the .tex file of the HTML dependencies.