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From zero to report PDF #2

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anitagraser opened this issue May 4, 2021 · 0 comments
Open

From zero to report PDF #2

anitagraser opened this issue May 4, 2021 · 0 comments

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@anitagraser
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Hi Daniel,

I've been working through the process to generate the report PDFs and am summarizing them here. If you're happy with it, I suggest adding it to the readme.


Create a new Python environment for the review efforts: conda create -n reviews

Activate the environment: conda activate reviews

If you're using Windows Linux Subsystem, make sure that Docker Desktop is running and WSL integration is enabled.

Run make and wait until Jupyter is ready.

Jupyter is ready

Open the Jupyter URL in your browser:

Start RStudio from Jupyter

Start RStudio and navigate to the reports directories containing the .Rmd files.

Now, you can use Knit to PDF to generate the report PDFs:

Create report PDF

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