NAMESPACE

# Generated by roxygen2: do not edit by hand

export(Rphenograph)
export(add.10x.image)
export(add.adt)
export(add.vdj)
export(adt.rna.merge)
export(capture.image.10x)
export(cc)
export(cell.cycle)
export(cell.filter)
export(cell.gating)
export(cell.type.pred)
export(change.clust)
export(clono.plot)
export(clust.avg.exp)
export(clust.cond.info)
export(clust.ord)
export(clust.rm)
export(clust.stats.plot)
export(cluster.plot)
export(data.aggregation)
export(data.scale)
export(down.sample)
export(find.dim.genes)
export(findMarkers)
export(find_neighbors)
export(gate.to.clust)
export(gene.plot)
export(gene.stats)
export(gg.cor)
export(heatmap.gg.plot)
export(hto.anno)
export(i.score)
export(iba)
export(iclust)
export(load.h5)
export(load10x)
export(make.bed)
export(make.gene.model)
export(make.obj)
export(myImp)
export(norm.adt)
export(norm.data)
export(opt.pcs.plot)
export(prep.vdj)
export(pseudotime)
export(pseudotime.knetl)
export(pseudotime.tree)
export(qc.stats)
export(run.anchor)
export(run.cca)
export(run.clustering)
export(run.diff.exp)
export(run.diffusion.map)
export(run.impute)
export(run.knetl)
export(run.mnn)
export(run.pc.tsne)
export(run.pca)
export(run.phenograph)
export(run.tsne)
export(run.umap)
export(spatial.plot)
export(stats.plot)
export(top.markers)
export(vdj.stats)
export(volcano.ma.plot)
import(Matrix)
import(NbClust)
import(RColorBrewer)
import(Rtsne)
import(ape)
import(ggdendro)
import(ggrepel)
import(gridExtra)
import(hdf5r)
import(knitr)
import(methods)
import(pheatmap)
import(plyr)
import(progress)
import(scatterplot3d)
import(shiny)
import(uwot)
importFrom(Hmisc,cut2)
importFrom(RANN,nn2)
importFrom(Rcpp,sourceCpp)
importFrom(data.table,data.table)
importFrom(data.table,setDT)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_polar)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_errorbar)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_colorbar)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,position_dodge)
importFrom(ggplot2,scale_color_discrete)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_colour_gradient)
importFrom(ggplot2,scale_fill_gradient2)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,scale_y_discrete)
importFrom(ggplot2,stat_summary)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggpubr,stat_compare_means)
importFrom(grDevices,col2rgb)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,rgb)
importFrom(graphics,legend)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(htmlwidgets,saveWidget)
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,as.undirected)
importFrom(igraph,cluster_fast_greedy)
importFrom(igraph,cluster_louvain)
importFrom(igraph,get.edgelist)
importFrom(igraph,graph.data.frame)
importFrom(igraph,layout_nicely)
importFrom(igraph,layout_with_fr)
importFrom(igraph,membership)
importFrom(igraph,modularity)
importFrom(igraph,simplify)
importFrom(jsonlite,fromJSON)
importFrom(methods,new)
importFrom(plotly,ggplotly)
importFrom(plotly,layout)
importFrom(plotly,plot_ly)
importFrom(png,readPNG)
importFrom(reshape,melt)
importFrom(stats,aggregate)
importFrom(stats,as.dendrogram)
importFrom(stats,cor)
importFrom(stats,cor.test)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,p.adjust)
importFrom(stats,prcomp)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(stats,t.test)
importFrom(utils,capture.output)
importFrom(utils,packageVersion)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(utils,write.table)
useDynLib(iCellR)