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NEWS.md

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MsBackendSql 1.7

Changes in 1.7.2

  • Import extractByIndex from ProtGenerics.
  • Add missing links in documentation.

Changes in 1.7.1

  • Complete unit tests to cover all code lines.

MsBackendSql 1.5

Changes in 1.5.1

  • Implement the new extractByIndex() methods.

MsBackendSql 1.3

Changes in 1.3.5

  • Improve input argument check and error message for backendInitialize() for MsBackendOfflineSql.
  • Update documentation adding () to all function names.

Changes in 1.3.4

  • Ensure primary keys from the database are in the correct order for backendInitialize().

Changes in 1.3.3

  • Import method generics from ProtGenerics.

Changes in 1.3.2

  • Add a dedicated setBackend method for MsBackendSql and MsBackendOfflineSql backends (issue #17).

Changes in 1.3.1

  • Add description on the use/advantages of different SQL database systems to the vignette.

MsBackendSql 1.1

Changes in 1.1.5

  • Add dbconn methods for MsBackendSql and MsBackendOfflineSql.

Changes in 1.1.4

  • Improve performance of createMsBackendSqlDatabase by using also parallel processing for the peaksData call.

Changes in 1.1.3

  • Add support for setBackend to MsBackendOfflineSql.

Changes in 1.1.2

  • Mention in documentation that MsBackendSql can not be saved to disk.
  • Expand vignette adding related documentation.

Changes in 1.1.1

  • Fix for filterRt avoiding to filter if range is infinite.

MsBackendSql 0.99

Changes in 0.99.7

  • Decrease required R version to 4.2.

Changes in 0.99.6

  • Add mzR to Suggests to ensure package vignettes can be build properly.

Changes in 0.99.5

  • Add MsBackendOfflineSql backend that re-connects to the database for each query.

Changes in 0.99.4

  • Add backendBpparam method to ensure parallel processing is disabled for the MsBackendSql backend.

Changes in 0.99.3

  • Add backendMerge method.
  • Add parameter data to backendInitialize to allow creating a new MsBackendSql database and store the values from data in it. This enables the use of Spectra,setBackend to convert any backend to a MsBackendSql.
  • Implement supportsSetBackend to enable setBackend,Spectra,MsBackendSql.

Changes in 0.99.2

  • Evaluate validity of the MsBackendSql using the full unit test suite from the Spectra package.

Changes in 0.99.1

  • Address Kayla's package review comments.

Changes in 0.99.0

  • Prepare the package for submission to Bioconductor.

MsBackendSql 0.98

Changes in 0.98.1

  • Rename MsqlBackend to MsBackendSql.

Changes in 0.98.0

  • Add vignette.

MsBackendSql 0.1

Changes in 0.1.0

  • Add parameter blob to allow storing m/z and intensity values as BLOB data type in the database. MsBackendSql will use different functions to retrieve data from a database with this type of storage.

MsBackendSql 0.0

Changes in 0.0.5

  • Add filterMsLevel method.
  • Add filterRt method.
  • Add filterDataOrigin method.
  • Add filterPrecursorMzRange method.
  • Add filterPrecursorMzValues method.

Changes in 0.0.4

  • Add optional parameter tempfile.

Changes in 0.0.3

  • Add peaksVariables methods and add support for parameter columns in peaksData (Requires Spectra version 1.15.17).

Changes in 0.0.2

  • First full implementation of MsBackendSql.