.gitignore

Gemfile.lock
# rcov generated
coverage

# rdoc generated
rdoc

# yard generated
doc
.yardoc

# bundler
.bundle

# jeweler generated
pkg

# Have editor/IDE/OS specific files you need to ignore? Consider using a global gitignore: 
#
# * Create a file at ~/.gitignore
# * Include files you want ignored
# * Run: git config --global core.excludesfile ~/.gitignore
#
# After doing this, these files will be ignored in all your git projects,
# saving you from having to 'pollute' every project you touch with them
#
# Not sure what to needs to be ignored for particular editors/OSes? Here's some ideas to get you started. (Remember, remove the leading # of the line)
#
# For MacOS:
#
.DS_Store
#
# For TextMate
#*.tmproj
#tmtags
#
# For emacs:
#*~
#\#*
#.\#*
#
# For vim:
#*.swp
.*
ext/Rakefile
lib/bio/ngs/ext/bin/common/fast*
lib/bio/ngs/ext/bin/common/bwa
lib/bio/ngs/ext/bin/common/samtools
lib/bio/ngs/ext/bin/common/lib
lib/bio/ngs/ext/bin/common/include
lib/bio/ngs/ext/bin/common/share
lib/bio/ngs/ext/bin/osx/bowtie/
lib/bio/ngs/ext/bin/osx/cufflinks/
lib/bio/ngs/ext/bin/osx/tophat/
listaxloc
out.fastq
spec/cufflinks_spec.rb
spec/fixture/s_1_1_1108_qseq.fastq
spec/fixture/test.fastq
test_fastq.fastq
.gitignore
TODO.json
spec/fixture/*.gtf
spec/fixture/*.gff*
spec/fixture/*.idx
spec/fixture/*.fastq.gz
neo4j
test/data/LandscapeBioNGS