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Ultimate rotamer library available #32

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alex-hh opened this issue Nov 15, 2024 · 1 comment
Open

Ultimate rotamer library available #32

alex-hh opened this issue Nov 15, 2024 · 1 comment

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@alex-hh
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alex-hh commented Nov 15, 2024

Hi - Is the ultimate rotamer library available for download somewhere?

Thanks!

@chrissciwilliams
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Hi Alex,

Our reference datasets are generally available here: https://github.com/rlabduke/reference_data/tree/master/Top8000

I'm not sure what form you're looking for. I suspect the most useful would be Top8000_rotamer_central_values, which lists each rotamer, with the mean and esd values for each chi dihedral.

Alternatively, you could dig into the very detailed data in Top8000_filtered_residues_rotarama, which lists every residue that passed our quality filters, and build a library from there.

Let me know how to help you find the right data for your work,
-Christopher Williams
--Richardson Lab, Duke University

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