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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

0.1.2 - 2024-10-31

🐛 Bug Fixes

  • (load) Fix a bug where datasets with multiple subsites (e.g. 2024-umcg-hypopharynx-larynx) would cause an error because of a missing maxsplit=2 argument.

0.1.1 - 2024-10-31

🚀 Features

  • (load) add get_repo() method that fetches remote repository information for a `LyDatasetConfig
  • (load) make authentication more flexible
  • (utils) put sub-/superlevel inference in its own utility function

0.1.0 - 2024-10-28

🚀 Features

  • (utils) Add often needed enhance function to complete sub-/superlevel involvement and infer maximum likelihood status.

🐛 Bug Fixes

  • Avoid KeyError in infer_superlevels

⚙️ Miscellaneous Tasks

  • Add link to release 0.0.4

Change

  • infer_su(b|per)levels skips inferring involvement of sub-/super LNLs that are already present
  • (load) Rename skip_disk to use_github
  • (query) Rename in_ to isin for C object

0.0.4 - 2024-10-11

🚀 Features

  • [breaking] Make several helper functions private (e.g., _max_likelihood())
  • (utils) Add more shortname columns, like surgery for ("patient", "#", "neck_dissection")
  • (load) Allow search for datasets at different locations on disk
  • (query) Add C object for easier Q creation
  • (query) Add in_ to C object
  • (validate) Add transform_to_lyprox function

🐛 Bug Fixes

  • (load) Resolve circular import of _repo

📚 Documentation

  • Add intersphinx mapping to pandera
  • Expand module docstrings
  • Update README.md with library examples

🧪 Testing

  • Fix failure due to changing order of items in set

Change

  • (validate) Add args to renamed validation
  • Import useful stuff as top-level
  • Make main() funcs private

Remove

  • (load) [breaking] load_dataset() not needed, one can just use next(load_datasets())

0.0.3 - 2024-10-01

🚀 Features

  • Add method to infer sublevel involvement #2
  • Add method to infer superlevel involvement #2
  • (load) Allow loading from different repository and/or reference (tag, commit, ...) #4

🐛 Bug Fixes

  • Make align_diagnoses() safer
  • Make combine() method work as intended
  • (load) Year may be equal to current year, not only smaller

📚 Documentation

  • Make accessor method docstring more detailed
  • Mention panda's update() in methods

⚙️ Miscellaneous Tasks

  • Add documentation link to metadata
  • Add changelog
  • Remove pyright setting (where from?)
  • Ignore B028 ruff rule

Change

  • Fix inconsistent method name

Merge

  • Branch '2-infer-sub-and-super-level-involvement' into 'dev'. Closes #2
  • Branch '4-allow-loading-from-different-tagsrevisions' into 'dev'. Closes #4

Refac

  • Rename some temporary variables

Remove

  • (load) Unused defined error class

0.0.2 - 2024-09-27

🚀 Features

  • Add some basic logging
  • Add percent and invert to portion

📚 Documentation

  • Ensure intersphinx links work

🧪 Testing

  • Add doctest to join_datasets()

⚙️ Miscellaneous Tasks

  • Update pre-commit hooks

Build

  • Remove dev deps

Change

  • Switch to pydantic for dataset definition
  • Shorten accessor name to ly

Refac

  • Make load funcs/methods clean & consistent

0.0.1 - 2024-08-05

Initial implementation of the lyDATA library.