Undefinded problems encountered during the build process #1168

SSSSamZhu · 2022-06-13T03:37:44Z

I'm trying to build the v2022.5.0 tag of the superbuild in a clean docker image with the following command:

RUN git clone  https://github.com/robotology/robotology-superbuild 
    cd robotology-superbuild 
    sudo bash ./scripts/install_apt_dependencies.sh 
    sudo rm -rf /var/lib/apt/lists/*

RUN mkdir build && cd build
    ccmake ./
    make

ROBOTOLOGY_ENABLE_DYNAMICS = ON
ROBOTOLOGY_ENABLE_DYNAMICS _FULL = ON

Error

[ 88%] Automatic MOC for target yarpmanager
[ 88%] Built target yarpmanager_autogen
Consolidate compiler generated dependencies of target yarpmanager
[ 88%] Linking CXX executable ../../bin/yarpmanager
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tgetnum@NCURSES6_TINFO_5.0.19991023'
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tputs@NCURSES6_TINFO_5.0.19991023'
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tgoto@NCURSES6_TINFO_5.0.19991023'
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tgetent@NCURSES6_TINFO_5.0.19991023'
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tgetstr@NCURSES6_TINFO_5.0.19991023'
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tgetflag@NCURSES6_TINFO_5.0.19991023'
collect2: error: ld returned 1 exit status
make[5]: *** [src/yarpmanager/CMakeFiles/yarpmanager.dir/build.make:667: bin/yarpmanager] Error 1
make[4]: *** [CMakeFiles/Makefile2:9546: src/yarpmanager/CMakeFiles/yarpmanager.dir/all] Error 2
make[3]: *** [Makefile:156: all] Error 2
make[2]: *** [CMakeFiles/YARP.dir/build.make:85: src/YARP/CMakeFiles/YCMStamp/YARP-build] Error 2
make[1]: *** [CMakeFiles/Makefile2:1051: CMakeFiles/YARP.dir/all] Error 2
make: *** [Makefile:101: all] Error 2

looking forward to your reply.

The text was updated successfully, but these errors were encountered:

traversaro · 2022-06-13T12:28:21Z

Hi @SSSSamZhu, which base docker image are you using? Thanks.

SSSSamZhu · 2022-06-14T07:49:39Z

Hi @traversaro
I built directly using Master.In addition, the host I configured has installed YARP3.6.0 before,YCM has also been upgraded to version 0.14.1.I'm not sure if this is the reason why the compile failed

traversaro · 2022-06-14T08:09:49Z

Hi @traversaro
I built directly using Master.

Hi @SSSSamZhu, master of what? What I was referring was the base image that you used in your Dockerfile, i.e. the one specified after FROM in your Dockerfile. More in general, if you could share your Dockerfile (or at least a subset of it) it would be helpful to help you. By searching a bit on the internet your error it seems that it may be something related to conflicts between apt and conda (see https://www.neuron.yale.edu/phpBB/viewtopic.php?t=4238 and neuronsimulator/nrn#410), so it may be helpful also if you could share the output of env executed in your Dockerfile, thanks.

SSSSamZhu · 2022-06-14T08:33:02Z

Hi @traversaro，
Maybe I gave you the wrong impression.I did not use Docker. I directly used clone files in base environment and did not use Conda to build virtual environment.

traversaro · 2022-06-14T08:40:41Z

Hi @SSSSamZhu, sorry but your original message started with:

I'm trying to build the v2022.5.0 tag of the superbuild in a clean docker image with the following command:
hence why I tought you used Docker.

Anyhow, if you are not using Docker, can you report:

Which distribution are you using (Ubuntu 20.04, Ubuntu 22.04, etc etc)
Report the output of the env command in the terminal in which you are building the superbuild?

SSSSamZhu · 2022-06-14T09:35:00Z

Hi @traversaro，
Sorry for my previous error message,

I am using Ubuntu 20.04
The command I entered and the information the terminal returned are as follows.

git config --global user.name guanming zhu
git config --global user.email 13702661257z@gmail.com
git clone https://github.com/robotology/robotology-superbuild
git checkout v2022.05.0
cd robotology-superbuild

sudo bash ./scripts/install_apt_dependencies.sh
...
The following packages were automatically installed and are no longer required:
  libatkmm-1.6-dev libcairomm-1.0-dev libfwupdplugin1 libglibmm-2.4-dev libgtkmm-2.4-1v5 libgtkmm-2.4-dev
  libjs-sphinxdoc libjs-underscore libpangomm-1.4-dev librhash0 libsigc++-2.0-dev ros-noetic-openslam-gmapping
Use 'sudo apt autoremove' to remove them.
0 to upgrade, 0 to newly install, 0 to remove and 95 not to upgrade.

mkdir build && cd build
ccmake ../
cmake ../
make -j8

...
[ 59%] Building CXX object src/libYARP_dev/src/CMakeFiles/YARP_dev.dir/yarp/dev/AudioPlayerStatus.cpp.o
[ 59%] Building CXX object src/libYARP_dev/src/CMakeFiles/YARP_dev.dir/yarp/dev/AudioRecorderStatus.cpp.o
[ 59%] Building CXX object src/libYARP_dev/src/CMakeFiles/YARP_dev.dir/yarp/dev/Map2DLocationData.cpp.o
[ 59%] Building CXX object src/libYARP_dev/src/CMakeFiles/YARP_dev.dir/yarp/dev/Map2DAreaData.cpp.o
[ 59%] Building CXX object src/libYARP_dev/src/CMakeFiles/YARP_dev.dir/yarp/dev/Map2DPathData.cpp.o
[ 59%] Linking CXX shared library ../../../lib/libYARP_dev.so
[ 59%] Built target YARP_dev
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tgetnum@NCURSES6_TINFO_5.0.19991023'
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tputs@NCURSES6_TINFO_5.0.19991023'
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tgoto@NCURSES6_TINFO_5.0.19991023'
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tgetent@NCURSES6_TINFO_5.0.19991023'
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tgetstr@NCURSES6_TINFO_5.0.19991023'
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tgetflag@NCURSES6_TINFO_5.0.19991023'
collect2: error: ld returned 1 exit status
make[5]: *** [src/yarplogger/CMakeFiles/yarplogger.dir/build.make:281: bin/yarplogger] Error 1
make[4]: *** [CMakeFiles/Makefile2:9588: src/yarplogger/CMakeFiles/yarplogger.dir/all] Error 2
make[4]: *** Waiting for unfinished jobs....
make[3]: *** [Makefile:156: all] Error 2
make[2]: *** [CMakeFiles/YARP.dir/build.make:85: src/YARP/CMakeFiles/YCMStamp/YARP-build] Error 2
make[1]: *** [CMakeFiles/Makefile2:943: CMakeFiles/YARP.dir/all] Error 2
make: *** [Makefile:101: all] Error 2

source ~/Desktop/robot/robotology-superbuild/build/install/share/robotology-superbuild/setup.sh
source ~/.bashrc
Setting up yarp and iCub env vars
sudo ldconfig

looking forward to your reply.

traversaro · 2022-06-14T09:37:21Z

Hi @SSSSamZhu, as mentioned before, can you:

Report the output of the env command in the terminal in which you are building the superbuild?

Thanks.

SSSSamZhu · 2022-06-14T09:50:59Z

Hi @traversaro，
I'm so sorry that not sure what is

the env command

Maybe you need this files ,error.log

CMakeError.log
CMakeOutput.log

traversaro · 2022-06-14T10:05:19Z

Hi @SSSSamZhu, with:

Report the output of the env command in the terminal in which you are building the superbuild?

I meant type the env command in the terminal where you built the superbuild, and report the output of the env command.

SSSSamZhu · 2022-06-14T10:49:07Z

Hi @traversaro，
I know exactly what you mean now.This is the result of me printing the environment variable at the terminal.
Thank you.


(base) icub@isaacliang-LC3:~/Desktop/robot/robotology-superbuild$ env
SHELL=/bin/bash
ROS_VERSION=1
SESSION_MANAGER=local/isaacliang-LC3:@/tmp/.ICE-unix/3785,unix/isaacliang-LC3:/tmp/.ICE-unix/3785
QT_ACCESSIBILITY=1
COLORTERM=truecolor
XDG_CONFIG_DIRS=/etc/xdg/xdg-ubuntu:/etc/xdg
XDG_SESSION_PATH=/org/freedesktop/DisplayManager/Session0
XDG_MENU_PREFIX=gnome-
ROBOT_CODE=/usr/local/src/robot
GNOME_DESKTOP_SESSION_ID=this-is-deprecated
CONDA_EXE=/home/icub/anaconda3/bin/conda
_CE_M=
ROBOTOLOGY_SUPERBUILD_INSTALL_PREFIX=/home/icub/Desktop/robot/robotology-superbuild/build/install
PKG_CONFIG_PATH=/opt/ros/noetic/lib/pkgconfig
ROS_PYTHON_VERSION=3
LANGUAGE=en_GB:en
LC_ADDRESS=zh_CN.UTF-8
OBJ_SUBDIR=build
GNOME_SHELL_SESSION_MODE=ubuntu
LC_NAME=zh_CN.UTF-8
SSH_AUTH_SOCK=/run/user/1000/keyring/ssh
YARP_BUILD_DIR=/usr/local/src/robot/yarp/build
YARP_ROBOT_NAME=iCubShenzhen01
XMODIFIERS=@im=ibus
DESKTOP_SESSION=ubuntu
LC_MONETARY=zh_CN.UTF-8
SSH_AGENT_PID=3750
MATLABPATH=/home/icub/Desktop/robot/robotology-superbuild/build/install/mex:/home/icub/Desktop/robot/robotology-superbuild/build/install/mex/+wbc/simulink/MomentumVelocityControl:/home/icub/Desktop/robot/robotology-superbuild/build/install/mex/+wbc/simulink:/home/icub/Desktop/robot/robotology-superbuild/build/install/mex/+wbc/examples:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/WBToolbox:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/WBToolbox/images
ROS_PACKAGE_PATH=/opt/ros/noetic/share:/home/icub/Desktop/robot/robotology-superbuild/build/install/share
CMAKE_BUILD_TYPE=Release
YARP_DIR=/usr/local/src/robot/yarp/build
GTK_MODULES=gail:atk-bridge
ROSLISP_PACKAGE_DIRECTORIES=
DBUS_STARTER_BUS_TYPE=session
PWD=/home/icub/Desktop/robot/robotology-superbuild
XDG_SESSION_DESKTOP=ubuntu
LOGNAME=icub
XDG_SESSION_TYPE=x11
CONDA_PREFIX=/home/icub/anaconda3
CFW2CANAPI_DIR=/lib/modules/5.14.0-1042-oem/iCubDrivers//cfw002/
GPG_AGENT_INFO=/run/user/1000/gnupg/S.gpg-agent:0:1
icub_firmware_shared_BUILD_DIR=/usr/local/src/robot/icub-firmware-shared/build
ICUB_SOURCE_DIR=/usr/local/src/robot/icub-main
XAUTHORITY=/home/icub/.Xauthority
XDG_GREETER_DATA_DIR=/var/lib/lightdm-data/icub
GDM_LANG=zh_CN
HOME=/home/icub
IM_CONFIG_PHASE=1
GAZEBO_PLUGIN_PATH=/home/icub/Desktop/robot/robotology-superbuild/build/install/lib:/home/icub/Desktop/robot/robotology-superbuild/build/install/lib:/home/icub/Desktop/robot/robotology-superbuild/build/install/lib
LC_PAPER=zh_CN.UTF-8
LANG=en_GB.UTF-8
ROS_ETC_DIR=/opt/ros/noetic/etc/ros
LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:
XDG_CURRENT_DESKTOP=ubuntu:GNOME
YARP_FORWARD_LOG_ENABLE=0
RTF_DIR=/usr/local/src/robot/robot-testing-framework/build
VTE_VERSION=6003
YARP_COLORED_OUTPUT=1
CONDA_PROMPT_MODIFIER=(base) 
ICUBcontrib_DIR=/usr/local/src/robot/iCubContrib
AMENT_PREFIX_PATH=/home/icub/Desktop/robot/robotology-superbuild/build/install:/home/icub/Desktop/robot/robotology-superbuild/build/install:/home/icub/Desktop/robot/robotology-superbuild/build/install
CMAKE_PREFIX_PATH=/opt/ros/noetic:/home/icub/Desktop/robot/robotology-superbuild/build/install:/home/icub/Desktop/robot/robotology-superbuild/build/install:/home/icub/Desktop/robot/robotology-superbuild/build/install
XDG_SEAT_PATH=/org/freedesktop/DisplayManager/Seat0
GNOME_TERMINAL_SCREEN=/org/gnome/Terminal/screen/7ec912d2_57aa_41dd_805a_9bdc5e94cfb2
https_proxy=http://127.0.0.1:12639
GAZEBO_RESOURCE_PATH=/home/icub/Desktop/robot/robotology-superbuild/build/install/share/gazebo/worlds:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/gazebo/worlds:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/gazebo/worlds
INVOCATION_ID=432ec184b6ab4262b3bafc5f5f2eace6
MANAGERPID=3590
YCM_SOURCE_DIR=/usr/local/src/robot/ycm
ROBOTOLOGY_SUPERBUILD_SOURCE_DIR=/home/icub/Desktop/robot/robotology-superbuild
LESSCLOSE=/usr/bin/lesspipe %s %s
XDG_SESSION_CLASS=user
ICUB_DIR=/usr/local/src/robot/icub-main/build
PYTHONPATH=/opt/ros/noetic/lib/python3/dist-packages
TERM=xterm-256color
LC_IDENTIFICATION=zh_CN.UTF-8
_CE_CONDA=
LESSOPEN=| /usr/bin/lesspipe %s
USER=icub
ICUB_TESTS=/usr/local/src/robot/icub-tests
GNOME_TERMINAL_SERVICE=:1.104
CONDA_SHLVL=1
icub_firmware_shared_SOURCE_DIR=/usr/local/src/robot/icub-firmware-shared
YCM_DIR=/usr/local/src/robot/ycm/build
DISPLAY=:0
SHLVL=1
LC_TELEPHONE=zh_CN.UTF-8
ROS_MASTER_URI=http://localhost:11311
QT_IM_MODULE=ibus
LC_MEASUREMENT=zh_CN.UTF-8
BLOCKFACTORY_PLUGIN_PATH=/home/icub/Desktop/robot/robotology-superbuild/build/install/lib/blockfactory:/home/icub/Desktop/robot/robotology-superbuild/build/install/lib/blockfactory:/home/icub/Desktop/robot/robotology-superbuild/build/install/lib/blockfactory
DBUS_STARTER_ADDRESS=unix:path=/run/user/1000/bus,guid=f1020bf51031947b5d93775b62a73180
PAPERSIZE=a4
http_proxy=http://127.0.0.1:12639
YARP_VERBOSE_OUTPUT=0
CONDA_PYTHON_EXE=/home/icub/anaconda3/bin/python
YARP_TRACE_ENABLE=0
LD_LIBRARY_PATH=/usr/local/cuda-11.6/lib64:/opt/ros/noetic/lib:/usr/local/cuda-11.6/lib64:/usr/local/src/robot/robot-testing-framework/build/lib:/usr/local/src/robot/icub-tests/build/plugins:/home/icub/Desktop/robot/robotology-superbuild/build/install/lib:/home/icub/Desktop/robot/robotology-superbuild/build/install/lib:/usr/local/src/robot/robot-testing-framework/build/lib:/usr/local/src/robot/icub-tests/build/plugins:/home/icub/Desktop/robot/robotology-superbuild/build/install/lib
XDG_RUNTIME_DIR=/run/user/1000
icub_firmware_shared_DIR=/usr/local/src/robot/icub-firmware-shared/build
CONDA_DEFAULT_ENV=base
YARP_SOURCE_DIR=/usr/local/src/robot/yarp
LC_TIME=zh_CN.UTF-8
GAZEBO_MODEL_PATH=/home/icub/Desktop/robot/robotology-superbuild/build/install/share/gazebo/models:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/iCub/robots:/home/icub/Desktop/robot/robotology-superbuild/build/install/share:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/RRbot/robots:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/gazebo/models:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/iCub/robots:/home/icub/Desktop/robot/robotology-superbuild/build/install/share:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/gazebo/models:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/iCub/robots:/home/icub/Desktop/robot/robotology-superbuild/build/install/share
JOURNAL_STREAM=8:59396
XDG_DATA_DIRS=/usr/share/ubuntu:/usr/local/share:/usr/share:/var/lib/snapd/desktop:/home/icub/Desktop/robot/robotology-superbuild/build/install/share:/home/icub/Desktop/robot/robotology-superbuild/build/install/share:/home/icub/Desktop/robot/robotology-superbuild/build/install/share
YARP_DATA_DIRS=/usr/local/src/robot/yarp/build/share/yarp:/usr/local/src/robot/icub-main/build/share/iCub:/usr/local/src/robot/iCubContrib/share/ICUBcontrib:/usr/local/src/robot/icub-tests/suites:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/yarp:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/iCub:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/ICUBcontrib
PATH=/usr/local/cuda-11.6/bin:/home/icub/anaconda3/bin:/opt/ros/noetic/bin:/usr/local/cuda-11.6/bin:/home/icub/anaconda3/bin:/home/icub/anaconda3/bin:/home/icub/anaconda3/condabin:/home/roboverse/iCub/icub-main/build:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/usr/local/src/robot/icub-main/build/bin:/usr/local/src/robot/yarp/build/bin:/usr/local/src/robot/iCubContrib/bin:/usr/local/src/robot/robot-testing-framework/build/bin:/home/icub/Desktop/robot/robotology-superbuild/build/install/bin:/home/icub/Desktop/robot/robotology-superbuild/build/install/bin:/usr/local/src/robot/icub-main/build/bin:/usr/local/src/robot/yarp/build/bin:/usr/local/src/robot/iCubContrib/bin:/usr/local/src/robot/robot-testing-framework/build/bin:/home/icub/Desktop/robot/robotology-superbuild/build/install/bin
GDMSESSION=ubuntu
ICUB_BUILD_DIR=/usr/local/src/robot/icub-main/build
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/1000/bus,guid=f1020bf51031947b5d93775b62a73180
ROS_ROOT=/opt/ros/noetic/share/ros
ROS_DISTRO=noetic
LC_NUMERIC=zh_CN.UTF-8
RobotTestingFramework_DIR=/usr/local/src/robot/robot-testing-framework
OLDPWD=/home/icub/Desktop/robot/robotology-superbuild/build
_=/usr/bin/env
(base) icub@isaacliang-LC3:~/Desktop/robot/robotology-superbuild$

traversaro · 2022-06-14T12:14:42Z

From the output, and the fact that your username is prefixed by (base) it seems that you have an activated conda environment called base. It is not supported to compile robotology-superbuild using apt dependencies if there is a conda environment activated, as these can lead to the conflicts that you are seeing.
My suggestion is to:

delete the existing build directory, as the existing build directory probably uses some libraries from conda and some from apt
deactivate the conda base environment. To do that only for a terminal, just do conda deactivated, while if you want this to be the default for newly opened terminals, run once conda config --set auto_activate_base false.
now, in a clean terminal (so where you do not have the (base) prefix) create a new build directory and compile the superbuild, you should not have any more problems.

SSSSamZhu · 2022-06-15T02:57:02Z

Morning @traversaro，
Unfortunately, these actions did not work. To make matters worse, I tried to recompile the previously compiled YARP source file and the same error occurred again. I'm not sure if there's any correlation or conflict between the two.
Here's how I did it ,

(base) icub@isaacliang-LC3:~/Desktop/robot/robotology-superbuild$ rm -rf build/
(base) icub@isaacliang-LC3:~/Desktop/robot/robotology-superbuild$ conda deactivate
icub@isaacliang-LC3:~/Desktop/robot/robotology-superbuild$ conda config --set auto_activate_base false
icub@isaacliang-LC3:~/Desktop/robot/robotology-superbuild$ mkdir build && cd build
icub@isaacliang-LC3:~/Desktop/robot/robotology-superbuild/build$ ccmake ../
icub@isaacliang-LC3:~/Desktop/robot/robotology-superbuild/build$ cmake ../
icub@isaacliang-LC3:~/Desktop/robot/robotology-superbuild/build$ make -j8
[  1%] Creating directories for 'YCM'
[  3%] Creating directories for 'icub-models'
[  5%] Performing download step (git clone) for 'YCM'
-- Avoiding repeated git clone, repository already exists
[  7%] Performing download step (git clone) for 'icub-models'
-- Avoiding repeated git clone, repository already exists
[  8%] No patch step for 'YCM'
[ 10%] Skipping update step for 'YCM'
[ 12%] No patch step for 'icub-models'
[ 14%] Skipping update step for 'icub-models'
[ 16%] Performing configure step for 'YCM'
Not searching for unused variables given on the command line.
loading initial cache file /home/icub/Desktop/robot/robotology-superbuild/build/src/YCM/CMakeFiles/YCMTmp/YCM-cache-Release.cmake
[ 17%] Performing configure step for 'icub-models'
Not searching for unused variables given on the command line.
loading initial cache file /home/icub/Desktop/robot/robotology-superbuild/build/src/icub-models/CMakeFiles/YCMTmp/icub-models-cache-Release.cmake
-- The C compiler identification is GNU 9.4.0
-- YCM Version: 0.14.1 (0.14.1)
CMake Warning (dev) at /usr/share/cmake-3.23/Modules/GNUInstallDirs.cmake:241 (message):
  Unable to determine default CMAKE_INSTALL_LIBDIR directory because no
  target architecture is known.  Please enable at least one language before
  including GNUInstallDirs.
Call Stack (most recent call first):
  CMakeLists.txt:29 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

.....
[ 61%] Built target YARP_dev
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tgetnum@NCURSES6_TINFO_5.0.19991023'
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tputs@NCURSES6_TINFO_5.0.19991023'
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tgoto@NCURSES6_TINFO_5.0.19991023'
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tgetent@NCURSES6_TINFO_5.0.19991023'
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tgetstr@NCURSES6_TINFO_5.0.19991023'
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tgetflag@NCURSES6_TINFO_5.0.19991023'
collect2: error: ld returned 1 exit status
make[5]: *** [src/yarpdataplayer/CMakeFiles/yarpdataplayer.dir/build.make:347: bin/yarpdataplayer] Error 1
make[4]: *** [CMakeFiles/Makefile2:9660: src/yarpdataplayer/CMakeFiles/yarpdataplayer.dir/all] Error 2
make[3]: *** [Makefile:156: all] Error 2
make[2]: *** [CMakeFiles/YARP.dir/build.make:85: src/YARP/CMakeFiles/YCMStamp/YARP-build] Error 2
make[1]: *** [CMakeFiles/Makefile2:943: CMakeFiles/YARP.dir/all] Error 2
make: *** [Makefile:101: all] Error 2

Looking forward to your reply

traversaro · 2022-06-17T14:14:18Z

Probably conda deactivate is not cleaning completly the environment, or something else is messing with the environment. For example, in your PATH I see a lot of /usr/local/src/robot/icub-main/build/bin .

To check this, can you please:

Report again the output of env . Sorry for asking it again, but now it should be different after the deactivation of the environment, but clearly something is still interfering
The output of ldd /usr/lib/x86_64-linux-gnu/libedit.so ?

Thanks

SSSSamZhu · 2022-06-20T11:54:18Z

Hi @traversaro，
Running the command you mentioned earlier yields the following result.

env

Setting up yarp and iCub env vars
icub@isaacliang-LC3:~$ env
SHELL=/bin/bash
ROS_VERSION=1
SESSION_MANAGER=local/isaacliang-LC3:@/tmp/.ICE-unix/3785,unix/isaacliang-LC3:/tmp/.ICE-unix/3785
GAZEBO_MASTER_URI=http://localhost:11345
QT_ACCESSIBILITY=1
COLORTERM=truecolor
XDG_CONFIG_DIRS=/etc/xdg/xdg-ubuntu:/etc/xdg
XDG_SESSION_PATH=/org/freedesktop/DisplayManager/Session0
XDG_MENU_PREFIX=gnome-
ROBOT_CODE=/usr/local/src/robot
GNOME_DESKTOP_SESSION_ID=this-is-deprecated
CONDA_EXE=/home/icub/anaconda3/bin/conda
_CE_M=
ROBOTOLOGY_SUPERBUILD_INSTALL_PREFIX=/usr/local/src/robot/robotology-superbuild/build/install
PKG_CONFIG_PATH=/opt/ros/noetic/lib/pkgconfig
ROS_PYTHON_VERSION=3
LANGUAGE=en_GB:en
TERMINATOR_DBUS_PATH=/net/tenshu/Terminator2
LC_ADDRESS=zh_CN.UTF-8
OBJ_SUBDIR=build
GNOME_SHELL_SESSION_MODE=ubuntu
LC_NAME=zh_CN.UTF-8
SSH_AUTH_SOCK=/run/user/1000/keyring/ssh
YARP_BUILD_DIR=/usr/local/src/robot/yarp/build
YARP_ROBOT_NAME=iCubShenzhen01
TERMINATOR_UUID=urn:uuid:f6675924-ce57-4bed-a31a-fea0f13913cc
XMODIFIERS=@im=ibus
DESKTOP_SESSION=ubuntu
LC_MONETARY=zh_CN.UTF-8
SSH_AGENT_PID=3750
ROS_PACKAGE_PATH=/opt/ros/noetic/share:/usr/local/src/robot/robotology-superbuild/build/install/share
CMAKE_BUILD_TYPE=Release
YARP_DIR=/usr/local/src/robot/yarp/build
GTK_MODULES=gail:atk-bridge
ROSLISP_PACKAGE_DIRECTORIES=
PWD=/home/icub
XDG_SESSION_DESKTOP=ubuntu
LOGNAME=icub
XDG_SESSION_TYPE=x11
CFW2CANAPI_DIR=/lib/modules/5.14.0-1042-oem/iCubDrivers//cfw002/
GPG_AGENT_INFO=/run/user/1000/gnupg/S.gpg-agent:0:1
icub_firmware_shared_BUILD_DIR=/usr/local/src/robot/icub-firmware-shared/build
ICUB_SOURCE_DIR=/usr/local/src/robot/icub-main
XAUTHORITY=/home/icub/.Xauthority
XDG_GREETER_DATA_DIR=/var/lib/lightdm-data/icub
GDM_LANG=zh_CN
HOME=/home/icub
IM_CONFIG_PHASE=1
GAZEBO_PLUGIN_PATH=/usr/lib/x86_64-linux-gnu/gazebo-11/plugins::/usr/local/src/robot/robotology-superbuild/build/install/lib
LC_PAPER=zh_CN.UTF-8
LANG=en_GB.UTF-8
GAZEBO_MODEL_DATABASE_URI=http://models.gazebosim.org
ROS_ETC_DIR=/opt/ros/noetic/etc/ros
LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:
XDG_CURRENT_DESKTOP=ubuntu:GNOME
YARP_FORWARD_LOG_ENABLE=0
RTF_DIR=/usr/local/src/robot/robot-testing-framework/build
VTE_VERSION=6003
YARP_COLORED_OUTPUT=1
ICUBcontrib_DIR=/usr/local/src/robot/iCubContrib
AMENT_PREFIX_PATH=/usr/local/src/robot/robotology-superbuild/build/install
CMAKE_PREFIX_PATH=/opt/ros/noetic:/usr/local/src/robot/robotology-superbuild/build/install
XDG_SEAT_PATH=/org/freedesktop/DisplayManager/Seat0
https_proxy=http://127.0.0.1:12639
GAZEBO_RESOURCE_PATH=/usr/share/gazebo-11::/usr/local/src/robot/robotology-superbuild/build/install/share/gazebo/worlds
INVOCATION_ID=22db299fb9b64d038cf9cb69089c39ab
TERMINATOR_DBUS_NAME=net.tenshu.Terminator21a9d5db22c73a993ff0b42f64b396873
MANAGERPID=3590
YCM_SOURCE_DIR=/usr/local/src/robot/ycm
ROBOTOLOGY_SUPERBUILD_SOURCE_DIR=/usr/local/src/robot/robotology-superbuild
LESSCLOSE=/usr/bin/lesspipe %s %s
XDG_SESSION_CLASS=user
ICUB_DIR=/usr/local/src/robot/icub-main/build
PYTHONPATH=/opt/ros/noetic/lib/python3/dist-packages
TERM=xterm-256color
LC_IDENTIFICATION=zh_CN.UTF-8
_CE_CONDA=
LESSOPEN=| /usr/bin/lesspipe %s
USER=icub
ICUB_TESTS=/usr/local/src/robot/icub-tests
CONDA_SHLVL=0
icub_firmware_shared_SOURCE_DIR=/usr/local/src/robot/icub-firmware-shared
YCM_DIR=/usr/local/src/robot/ycm/build
DISPLAY=:0
SHLVL=1
LC_TELEPHONE=zh_CN.UTF-8
ROS_MASTER_URI=http://localhost:11311
QT_IM_MODULE=ibus
LC_MEASUREMENT=zh_CN.UTF-8
BLOCKFACTORY_PLUGIN_PATH=/usr/local/src/robot/robotology-superbuild/build/install/lib/blockfactory
PAPERSIZE=a4
http_proxy=http://127.0.0.1:12639
YARP_VERBOSE_OUTPUT=0
CONDA_PYTHON_EXE=/home/icub/anaconda3/bin/python
YARP_TRACE_ENABLE=0
LD_LIBRARY_PATH=/usr/local/cuda-11.6/lib64:/opt/ros/noetic/lib::/usr/local/src/robot/robot-testing-framework/build/lib:/usr/local/src/robot/icub-tests/build/plugins:/usr/local/src/robot/robotology-superbuild/build/install/lib:/usr/lib/x86_64-linux-gnu/gazebo-11/plugins:
XDG_RUNTIME_DIR=/run/user/1000
icub_firmware_shared_DIR=/usr/local/src/robot/icub-firmware-shared/build
YARP_SOURCE_DIR=/usr/local/src/robot/yarp
LC_TIME=zh_CN.UTF-8
GAZEBO_MODEL_PATH=/usr/share/gazebo-11/models::/usr/local/src/robot/robotology-superbuild/build/install/share/gazebo/models:/usr/local/src/robot/robotology-superbuild/build/install/share/iCub/robots:/usr/local/src/robot/robotology-superbuild/build/install/share
JOURNAL_STREAM=8:51060
XDG_DATA_DIRS=/usr/share/ubuntu:/usr/local/share:/usr/share:/var/lib/snapd/desktop:/usr/local/src/robot/robotology-superbuild/build/install/share
YARP_DATA_DIRS=/usr/local/src/robot/yarp/build/share/yarp:/usr/local/src/robot/icub-main/build/share/iCub:/usr/local/src/robot/iCubContrib/share/ICUBcontrib:/usr/local/src/robot/icub-tests/suites:/usr/local/src/robot/robotology-superbuild/build/install/share/yarp:/usr/local/src/robot/robotology-superbuild/build/install/share/iCub:/usr/local/src/robot/robotology-superbuild/build/install/share/ICUBcontrib
PATH=/usr/local/cuda-11.6/bin:/home/icub/anaconda3/bin:/home/icub/anaconda3/condabin:/opt/ros/noetic/bin:/home/roboverse/iCub/icub-main/build:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/usr/local/src/robot/icub-main/build/bin:/usr/local/src/robot/yarp/build/bin:/usr/local/src/robot/iCubContrib/bin:/usr/local/src/robot/robot-testing-framework/build/bin:/usr/local/src/robot/robotology-superbuild/build/install/bin
GDMSESSION=ubuntu
ICUB_BUILD_DIR=/usr/local/src/robot/icub-main/build
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/1000/bus
ROS_ROOT=/opt/ros/noetic/share/ros
ROS_DISTRO=noetic
GIO_LAUNCHED_DESKTOP_FILE_PID=186710
LC_NUMERIC=zh_CN.UTF-8
OGRE_RESOURCE_PATH=/usr/lib/x86_64-linux-gnu/OGRE-1.9.0
RobotTestingFramework_DIR=/usr/local/src/robot/robot-testing-framework
_=/usr/bin/env

Compared with the previous increase of environment variables, there are several reduced.I don't have an effective solution to this situation.But the environment variables you mentioned above should have been introduced when yarp and icub-main source files were configured

...
GAZEBO_MASTER_URI=http://localhost:11345
...
TERMINATOR_DBUS_PATH=/net/tenshu/Terminator2
...

This is the contents of the environment variable configuration file .bashrc_iCub

#===============================================================================
# Title:        bashrc_iCub.sh
# Description:  this is the iCub environment file
# Date:         2021-MAR-02
# Usage:        source bashrc_iCub.sh
#===============================================================================
if [ "$PS1" ]; then
  echo "Setting up yarp and iCub env vars"
fi
# YARP and iCub enviroment variables
export ROBOT_CODE=/usr/local/src/robot
export YARP_SOURCE_DIR=${ROBOT_CODE}/yarp
export ICUB_SOURCE_DIR=${ROBOT_CODE}/icub-main
export icub_firmware_shared_SOURCE_DIR=${ROBOT_CODE}/icub-firmware-shared
export YCM_SOURCE_DIR=${ROBOT_CODE}/ycm
export RTF_DIR=${ROBOT_CODE}/robot-testing-framework/build
export ICUB_TESTS=${ROBOT_CODE}/icub-tests
export RobotTestingFramework_DIR=${ROBOT_CODE}/robot-testing-framework
export ICUBcontrib_DIR=${ROBOT_CODE}/iCubContrib
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${RTF_DIR}/lib
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${ICUB_TESTS}/build/plugins

# Change the name of build path here, according to your needs
export OBJ_SUBDIR="build"
if [ "$OBJ_SUBDIR" != "" ]; then
  export YARP_BUILD_DIR=${YARP_SOURCE_DIR}/${OBJ_SUBDIR}
  export ICUB_BUILD_DIR=${ICUB_SOURCE_DIR}/${OBJ_SUBDIR}
  export YARP_DIR=${YARP_BUILD_DIR}
  export ICUB_DIR=${ICUB_BUILD_DIR}
  export icub_firmware_shared_BUILD_DIR=${icub_firmware_shared_SOURCE_DIR}/${OBJ_SUBDIR}
  export icub_firmware_shared_DIR=${icub_firmware_shared_BUILD_DIR}
  export YCM_DIR=${YCM_SOURCE_DIR}/${OBJ_SUBDIR}
  export YARP_DATA_DIRS=${YARP_DIR}/share/yarp:${ICUB_DIR}/share/iCub:${ICUBcontrib_DIR}/share/ICUBcontrib:${ROBOT_CODE}/icub-tests/suites
  export PATH=$PATH:${ICUB_DIR}/bin:${YARP_DIR}/bin:${ICUBcontrib_DIR}/bin:${RTF_DIR}/bin
fi

# To enable tab completion on yarp port names
if [ -f ${YARP_SOURCE_DIR}/data/bash-completion/yarp ]; then
  source ${YARP_SOURCE_DIR}/data/bash-completion/yarp
fi

# Set the name of your robot here.
export YARP_ROBOT_NAME=iCubShenzhen01
if [ "$YARP_ROBOT_NAME" = "" ] && [ -f "${ROBOT_CODE}/yarp_robot_name.txt" ]
 then
   export YARP_ROBOT_NAME=$( head --lines=1 ${ROBOT_CODE}/yarp_robot_name.txt )
fi

# Set-up optimizations
export CMAKE_BUILD_TYPE=Release

# DebugStream customization
export YARP_VERBOSE_OUTPUT=0
export YARP_COLORED_OUTPUT=1
export YARP_TRACE_ENABLE=0
export YARP_FORWARD_LOG_ENABLE=0

# Drivers section
DRIVER_ROOT=/lib/modules/$(uname -r)/iCubDrivers/
# to be used if the corresponding hardware is mounted on the robot 
#export ESDCANAPI_DIR=${DRIVER_ROOT}/esdCanApi/
#export PLXCANAPI_DIR=${DRIVER_ROOT}/plxCanApi/
export CFW2CANAPI_DIR=${DRIVER_ROOT}/cfw002/

ldd /usr/lib/x86_64-linux-gnu/libedit.so

icub@isaacliang-LC3:~$ ldd /usr/lib/x86_64-linux-gnu/libedit.so
	linux-vdso.so.1 (0x00007ffc7a720000)
	libtinfo.so.6 => /lib/x86_64-linux-gnu/libtinfo.so.6 (0x00007f3105c71000)
	libbsd.so.0 => /lib/x86_64-linux-gnu/libbsd.so.0 (0x00007f3105c57000)
	libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f3105a65000)
	/lib64/ld-linux-x86-64.so.2 (0x00007f3105d26000)

Thank you.

traversaro · 2022-06-20T13:05:59Z

The .bashrc_iCub that you are using is the one meant to be used when YARP, ICUB are only build separately, not as part of the superbuild, if you are using the superbuild please used instead https://raw.githubusercontent.com/icub-tech-iit/icub-os-files/master/user-environment/bashrc_iCub_superbuild (see https://icub-tech-iit.github.io/documentation/icub_operating_systems/icubos/user-env/#note).

For your specific linking problem, I still does not understand what is going on, as additional info can you provide:

1. output of readelf -s /lib/x86_64-linux-gnu/libedit.so.2 | grep tgetnum
1. output of readelf -s /lib/x86_64-linux-gnu/libtinfo.so | grep tgetnum
1. The CMakeCache.txt contained in build/src/YARP
1. Can you go in build/src/YARP, run cmake CMAKE_EXPORT_COMPILE_COMMANDS:BOOL=ON . and return the compile_commands.json that this command will generated in the build?

Sorry for asking so much info, I am quite confused as we continuously test this in CI and never saw something similar. The only difference between your case and the CI is that in your case you have ROS enabled, so if you want to try it could make sense to comment out from the .bashrc the ROS's setup.sh and generated a new build of the superbuild in a clean environment, but I would be quite surprised if this is related to ROS.

Another workaround you may try is to uninstall the libedit-dev. This should work, even if it is just a workaround that may hide the real problems.

SSSSamZhu · 2022-06-21T04:24:08Z

Hi @traversaro，
Running the command you mentioned earlier yields the following result.
1,2.

icub@isaacliang-LC3:~$ readelf -s /lib/x86_64-linux-gnu/libedit.so.2 | grep tgetnum
    84: 0000000000000000     0 FUNC    GLOBAL DEFAULT  UND tgetnum@NCURSES6_TINFO_5.0.19991023 (4)
icub@isaacliang-LC3:~$ readelf -s /lib/x86_64-linux-gnu/libtinfo.so | grep tgetnum
    95: 0000000000014b00   285 FUNC    GLOBAL DEFAULT   15 tgetnum_sp@@NCURSES6_TINFO_5.8.20110226
   188: 0000000000014c20    22 FUNC    GLOBAL DEFAULT   15 tgetnum@@NCURSES6_TINFO_5.0.19991023

3.4.
film.zip

Thank you.

traversaro · 2022-06-21T07:54:12Z

Hi @SSSSamZhu, perhaps I am missing something but the film.zip file seems empty.

SSSSamZhu · 2022-06-21T08:13:35Z

Hi @traversaro，
I'm awfully sorry for my oversight. I re-uploaded the folder.In addition, I would like to ask what is the meaning of uninstall the libedit-devDo I need to delete this configuration file?

New Folder.zip

traversaro · 2022-06-21T08:15:08Z

In addition, I would like to ask what is the meaning of uninstall the libedit-dev

I meant running:

sudo apt remove libedit-dev

traversaro · 2022-06-21T08:22:08Z

Thanks, as I mentioned before, the problem is always the same, there is still cross-talking between apt libraries and conda libraries. If you check your environment, you will see that even if you deactivated the environment, you still have /home/icub/anaconda3/bin in your PATH, and hence the problem (you can verify yourself by opening the CMakeCache.txt and noting how many times there is a part that start with /home/icub/anaconda3. Do you have any idea why this happens?

If you are not using anaconda3 for anything, I suggest you do uninstall it. If instead you need it to have it in the system, I suggest to try to understand who is adding /home/icub/anaconda3/bin in your PATH, and remove it.

SSSSamZhu · 2022-06-21T11:56:11Z

Hi @traveraro，
Thanks for your patience

I tried to execute this command, but it had new problems during the build phase, so I ended up having to reinstall it.
sudo apt remove libedit-dev
I'm trying to understand what you mean.，maybe I'll be wrong.
/home/icub/anaconda3/bin is no longer in my PATH, which means there is no more crosstalk between apt and conda. So I tried to remove all the environment variables associated with /home/icub/anaconda3/bin, but unfortunately the problem continued and this is the final print.

icub@isaacliang-LC3:~/Desktop/robot/robotology-superbuild/build$ make -j8
[  1%] Skipping update step for 'YCM'
[  3%] Skipping update step for 'icub-models'
[  5%] Performing configure step for 'YCM'
	
....
[ 51%] Built target YARP_companion
[ 51%] Building CXX object src/libYARP_profiler/src/CMakeFiles/YARP_profiler.dir/yarp/profiler/NetworkProfilerBasic.cpp.o
[ 59%] Built target YARP_dev
[ 59%] Building CXX object src/libYARP_profiler/src/CMakeFiles/YARP_profiler.dir/yarp/profiler/NetworkProfiler.cpp.o
[ 59%] Built target yarpdataplayer_autogen
[ 59%] Building CXX object src/yarp/CMakeFiles/yarp.dir/yarp.cpp.o
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tgetnum@NCURSES6_TINFO_5.0.19991023'
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tputs@NCURSES6_TINFO_5.0.19991023'
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tgoto@NCURSES6_TINFO_5.0.19991023'
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tgetent@NCURSES6_TINFO_5.0.19991023'
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tgetstr@NCURSES6_TINFO_5.0.19991023'
/usr/bin/ld: /lib/x86_64-linux-gnu/libedit.so.2: undefined reference to `tgetflag@NCURSES6_TINFO_5.0.19991023'
collect2: error: ld returned 1 exit status
make[5]: *** [src/yarplogger/CMakeFiles/yarplogger.dir/build.make:281: bin/yarplogger] Error 1
make[4]: *** [CMakeFiles/Makefile2:9588: src/yarplogger/CMakeFiles/yarplogger.dir/all] Error 2
make[4]: *** Waiting for unfinished jobs....
[ 59%] Building CXX object src/libYARP_profiler/src/CMakeFiles/YARP_profiler.dir/yarp/profiler/Graph.cpp.o
[ 59%] Linking CXX executable ../../bin/yarp
[ 59%] Built target yarp
[ 60%] Linking CXX static library ../../../lib/libYARP_profiler.a
[ 60%] Built target YARP_profiler
[ 61%] Linking CXX executable ../../bin/yarpmanager-console
[ 61%] Built target yarpmanager-console
[ 61%] Linking CXX executable ../../bin/yarpdataplayer-console
[ 61%] Built target yarpdataplayer-console
make[3]: *** [Makefile:156: all] Error 2
make[2]: *** [CMakeFiles/YARP.dir/build.make:85: src/YARP/CMakeFiles/YCMStamp/YARP-build] Error 2
make[1]: *** [CMakeFiles/Makefile2:943: CMakeFiles/YARP.dir/all] Error 2
make: *** [Makefile:101: all] Error 2
icub@isaacliang-LC3:~/Desktop/robot/robotology-superbuild/build$ env
SHELL=/bin/bash
ROS_VERSION=1
SESSION_MANAGER=local/isaacliang-LC3:@/tmp/.ICE-unix/3785,unix/isaacliang-LC3:/tmp/.ICE-unix/3785
GAZEBO_MASTER_URI=http://localhost:11345
QT_ACCESSIBILITY=1
COLORTERM=truecolor
XDG_CONFIG_DIRS=/etc/xdg/xdg-ubuntu:/etc/xdg
XDG_SESSION_PATH=/org/freedesktop/DisplayManager/Session0
XDG_MENU_PREFIX=gnome-
ROBOT_CODE=/usr/local/src/robot
GNOME_DESKTOP_SESSION_ID=this-is-deprecated
ROBOTOLOGY_SUPERBUILD_INSTALL_PREFIX=/usr/local/src/robot/robotology-superbuild/build/install
PKG_CONFIG_PATH=/opt/ros/noetic/lib/pkgconfig
ROS_PYTHON_VERSION=3
LANGUAGE=en_GB:en
LC_ADDRESS=zh_CN.UTF-8
OBJ_SUBDIR=build
GNOME_SHELL_SESSION_MODE=ubuntu
LC_NAME=zh_CN.UTF-8
SSH_AUTH_SOCK=/run/user/1000/keyring/ssh
YARP_BUILD_DIR=/usr/local/src/robot/robotology-superbuild/build/src/YARP
YARP_ROBOT_NAME=iCubShenzhen01
XMODIFIERS=@im=ibus
ICUBcontrib_BUILD_DIR=/usr/local/src/robot/robotology-superbuild/build/src/ICUBcontrib
DESKTOP_SESSION=ubuntu
LC_MONETARY=zh_CN.UTF-8
SSH_AGENT_PID=3750
ROS_PACKAGE_PATH=/opt/ros/noetic/share:/usr/local/src/robot/robotology-superbuild/build/install/share
CMAKE_BUILD_TYPE=Release
GTK_MODULES=gail:atk-bridge
ROSLISP_PACKAGE_DIRECTORIES=
DBUS_STARTER_BUS_TYPE=session
PWD=/home/icub/Desktop/robot/robotology-superbuild/build
XDG_SESSION_DESKTOP=ubuntu
LOGNAME=icub
XDG_SESSION_TYPE=x11
CFW2CANAPI_DIR=/lib/modules/5.14.0-1042-oem/iCubDrivers//cfw002/
GPG_AGENT_INFO=/run/user/1000/gnupg/S.gpg-agent:0:1
icub_firmware_shared_BUILD_DIR=/usr/local/src/robot/robotology-superbuild/build/src/icub_firmware_shared
ICUB_SOURCE_DIR=/usr/local/src/robot/robotology-superbuild/src/ICUB
XAUTHORITY=/home/icub/.Xauthority
XDG_GREETER_DATA_DIR=/var/lib/lightdm-data/icub
GDM_LANG=zh_CN
HOME=/home/icub
IM_CONFIG_PHASE=1
GAZEBO_PLUGIN_PATH=/usr/lib/x86_64-linux-gnu/gazebo-11/plugins:/usr/lib/x86_64-linux-gnu/gazebo-11/plugins::/usr/local/src/robot/robotology-superbuild/build/install/lib:/usr/local/src/robot/robotology-superbuild/build/install/lib
LC_PAPER=zh_CN.UTF-8
LANG=en_GB.UTF-8
ROS_ETC_DIR=/opt/ros/noetic/etc/ros
GAZEBO_MODEL_DATABASE_URI=http://models.gazebosim.org
LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:
XDG_CURRENT_DESKTOP=ubuntu:GNOME
YARP_FORWARD_LOG_ENABLE=0
VTE_VERSION=6003
YARP_COLORED_OUTPUT=1
ICUBcontrib_DIR=/usr/local/src/robot/robotology-superbuild/src/icub-contrib-common
AMENT_PREFIX_PATH=/usr/local/src/robot/robotology-superbuild/build/install:/usr/local/src/robot/robotology-superbuild/build/install
CMAKE_PREFIX_PATH=/opt/ros/noetic:/usr/local/src/robot/robotology-superbuild/build/install:/usr/local/src/robot/robotology-superbuild/build/install
XDG_SEAT_PATH=/org/freedesktop/DisplayManager/Seat0
GNOME_TERMINAL_SCREEN=/org/gnome/Terminal/screen/0b9158e7_465d_4228_811d_374f17375e35
https_proxy=http://127.0.0.1:12639
GAZEBO_RESOURCE_PATH=/usr/share/gazebo-11:/usr/share/gazebo-11::/usr/local/src/robot/robotology-superbuild/build/install/share/gazebo/worlds:/usr/local/src/robot/robotology-superbuild/build/install/share/gazebo/worlds
INVOCATION_ID=432ec184b6ab4262b3bafc5f5f2eace6
MANAGERPID=3590
ROBOTOLOGY_SUPERBUILD_SOURCE_DIR=/home/icub/Desktop/robot/robotology-superbuild
LESSCLOSE=/usr/bin/lesspipe %s %s
XDG_SESSION_CLASS=user
PYTHONPATH=/opt/ros/noetic/lib/python3/dist-packages
TERM=xterm-256color
LC_IDENTIFICATION=zh_CN.UTF-8
LESSOPEN=| /usr/bin/lesspipe %s
USER=icub
ROBOTOLOGY_SUPERBUILD_BUILD_DIR=/usr/local/src/robot/robotology-superbuild/build
GNOME_TERMINAL_SERVICE=:1.679
icub_firmware_shared_SOURCE_DIR=/usr/local/src/robot/robotology-superbuild/src/icub_firmware_shared
DISPLAY=:0
SHLVL=1
LC_TELEPHONE=zh_CN.UTF-8
ROS_MASTER_URI=http://localhost:11311
QT_IM_MODULE=ibus
LC_MEASUREMENT=zh_CN.UTF-8
BLOCKFACTORY_PLUGIN_PATH=/usr/local/src/robot/robotology-superbuild/build/install/lib/blockfactory:/usr/local/src/robot/robotology-superbuild/build/install/lib/blockfactory
ROBOTOLOGY_SUPERBUILD_INSTALL_DIR=/usr/local/src/robot/robotology-superbuild/build/install
DBUS_STARTER_ADDRESS=unix:path=/run/user/1000/bus,guid=f1020bf51031947b5d93775b62a73180
PAPERSIZE=a4
http_proxy=http://127.0.0.1:12639
YARP_VERBOSE_OUTPUT=0
YARP_TRACE_ENABLE=0
LD_LIBRARY_PATH=/opt/ros/noetic/lib:/usr/local/src/robot/robotology-superbuild/build/install/lib:/usr/lib/x86_64-linux-gnu/gazebo-11/plugins::/usr/local/src/robot/robotology-superbuild/build/install/lib:/usr/lib/x86_64-linux-gnu/gazebo-11/plugins:/usr/lib/x86_64-linux-gnu/gazebo-11/plugins::/usr/local/src/robot/robotology-superbuild/build/install/lib
XDG_RUNTIME_DIR=/run/user/1000
YARP_SOURCE_DIR=/usr/local/src/robot/robotology-superbuild/src/YARP
LC_TIME=zh_CN.UTF-8
GAZEBO_MODEL_PATH=/usr/share/gazebo-11/models:/usr/share/gazebo-11/models::/usr/local/src/robot/robotology-superbuild/build/install/share/gazebo/models:/usr/local/src/robot/robotology-superbuild/build/install/share/iCub/robots:/usr/local/src/robot/robotology-superbuild/build/install/share:/usr/local/src/robot/robotology-superbuild/build/install/share/gazebo/models:/usr/local/src/robot/robotology-superbuild/build/install/share/iCub/robots:/usr/local/src/robot/robotology-superbuild/build/install/share
JOURNAL_STREAM=8:59396
XDG_DATA_DIRS=/usr/share/ubuntu:/usr/local/share:/usr/share:/var/lib/snapd/desktop:/usr/local/src/robot/robotology-superbuild/build/install/share:/usr/local/src/robot/robotology-superbuild/build/install/share
YARP_DATA_DIRS=/home/roboverse/yarp/build/share/yarp:/home/roboverse/iCub/icub-main/build/share/iCub:/home/roboverse/iCub/iCubContrib/share/ICUBcontrib:/usr/local/src/robot/robotology-superbuild/build/install/share/yarp:/usr/local/src/robot/robotology-superbuild/build/install/share/iCub:/usr/local/src/robot/robotology-superbuild/build/install/share/ICUBcontrib:/usr/local/src/robot/robotology-superbuild/build/install/share/yarp:/usr/local/src/robot/robotology-superbuild/build/install/share/iCub:/usr/local/src/robot/robotology-superbuild/build/install/share/ICUBcontrib
PATH=/opt/ros/noetic/bin:/home/roboverse/iCub/icub-main/build:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/usr/local/src/robot/robotology-superbuild/build/install/bin:/usr/local/src/robot/robotology-superbuild/build/install/bin
GDMSESSION=ubuntu
ICUB_BUILD_DIR=/usr/local/src/robot/robotology-superbuild/build/src/ICUB
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/1000/bus,guid=f1020bf51031947b5d93775b62a73180
ROS_ROOT=/opt/ros/noetic/share/ros
ROS_DISTRO=noetic
LC_NUMERIC=zh_CN.UTF-8
OGRE_RESOURCE_PATH=/usr/lib/x86_64-linux-gnu/OGRE-1.9.0
_=/usr/bin/env

CMakeCache.txt and compile_commands.json
New Folder.zip

So far, I wonder if the configuration of my computer itself conflicts with YARP. The same error occurs when compiling a single YRAP independently, as I reported earlier. It is simple and feasible to compile YARP separately before compiling superbuild. As for Conda, I have tried to recompile directly from a new environment, but this problem still occurs.
I have a question that I would like to ask. Can I try to change the method of building using Conda-Forge on this host? Will it conflict with the APT method I used before ? https://github.com/robotology/robotology-superbuild/blob/master/doc/conda-forge.md

In conclusion, thank you very much for your patience

traversaro · 2022-06-21T12:08:36Z

I have a question that I would like to ask. Can I try to change the method of building using Conda-Forge on this host? Will it conflict with the APT method I used before ? https://github.com/robotology/robotology-superbuild/blob/master/doc/conda-forge.md

You can try, as long as you do not source the setup.sh of the superbuild compiled with apt dependencies. However, you will then need to create a clean environemnt using only the conda-forge environement and not the defaults one that comes by default if you install anaconda, so also that may not be trivial.

I'm trying to understand what you mean.，maybe I'll be wrong.
/home/icub/anaconda3/bin is no longer in my PATH, which means there is no more crosstalk between apt and conda. So I tried to remove all the environment variables associated with /home/icub/anaconda3/bin, but unfortunately the problem continued and this is the final print.

Did you remove your build directory and created a new one after you removed /home/icub/anaconda3/bin from your path? If you did not, this explains the errors, as CMake caches a lot of paths so you will still have references to /home/icub/anaconda3/bin around. Indeed, it seems that you still have a lot of /home/icub/anaconda3 variables in your CMakeCache.txt .

SSSSamZhu · 2022-06-22T08:19:13Z

Hi @traveraro，
Thanks, it works !
My original problem was solved after I removed the build and rebuilt it. In this case, anaconda3 does affect compilation. I have enabled two CMAKE options, ROBOTOLOGY_ENABLE_DYNAMICS and ROBOTOLOGY_ENABLE_DYNAMICS_FULL_DEPS .
But we meet new problems now. The problem we had in the beginning was this

icub@isaacliang-LC3:~/Desktop/robot/robotology-superbuild/build$ make -j64
[  1%] Skipping update step for 'YCM'
[  3%] Skipping update step for 'icub-models'
[  5%] Performing configure step for 'YCM'
......
-- Generating done
-- Build files have been written to: /home/icub/Desktop/robot/robotology-superbuild/build/src/bipedal-locomotion-framework
[ 94%] Performing build step for 'bipedal-locomotion-framework'
Consolidate compiler generated dependencies of target VectorsCollection
Consolidate compiler generated dependencies of target TextLogging
[  2%] Built target VectorsCollection
[  3%] Linking CXX shared library ../../lib/libBipedalLocomotionFrameworkTextLogging.so
/usr/bin/ld: /usr/local/lib/libspdlog.a(spdlog.cpp.o): relocation R_X86_64_TPOFF32 against `_ZGVZN6spdlog7details2os9thread_idEvE3tid' can not be used when making a shared object; recompile with -fPIC
collect2: error: ld returned 1 exit status
make[5]: *** [src/TextLogging/CMakeFiles/TextLogging.dir/build.make:130: lib/libBipedalLocomotionFrameworkTextLogging.so.0.6.0] Error 1
make[4]: *** [CMakeFiles/Makefile2:1116: src/TextLogging/CMakeFiles/TextLogging.dir/all] Error 2
make[3]: *** [Makefile:136: all] Error 2
make[2]: *** [CMakeFiles/bipedal-locomotion-framework.dir/build.make:85: src/bipedal-locomotion-framework/CMakeFiles/YCMStamp/bipedal-locomotion-framework-build] Error 2
make[1]: *** [CMakeFiles/Makefile2:2297: CMakeFiles/bipedal-locomotion-framework.dir/all] Error 2
make: *** [Makefile:101: all] Error 2

We have referred to this issue and it is useful to some extent.
gabime/spdlog#1405 (comment)
I ran the command
cmake -DCMAKE_POSITION_INDEPENDENT_CODE=ON .. && make -j
But then he had a new problem, maybe it's the same problem we had in the first place.

icub@isaacliang-LC3:~/Desktop/robot/robotology-superbuild/build$ make -j64
[ 73%] Skipping update step for 'osqp'
[ 73%] Skipping update step for 'YCM'
[ 73%] Skipping update step for 'qpOASES'
[ 73%] Skipping update step for 'CppAD'
[ 73%] Skipping update step for 'icub-models'
[ 73%] Skipping update step for 'BlockFactory'
[ 73%] Skipping update step for 'matioCpp'
[ 73%] Skipping update step for 'manif'
[ 73%] Skipping update step for 'qhull'
[ 73%] Performing configure step for 'osqp'
....
[ 73%] Performing install step for 'qhull'
Not searching for unused variables given on the command line.
CMake Deprecation Warning at CMakeLists.txt:31 (cmake_policy):
  The OLD behavior for policy CMP0011 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


CMake Deprecation Warning at CMakeLists.txt:35 (cmake_policy):
  The OLD behavior for policy CMP0005 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


loading initial cache file /home/icub/Desktop/robot/robotology-superbuild/build/src/OsqpEigen/CMakeFiles/YCMTmp/OsqpEigen-cache-Release.cmake
CMake Error at cmake/language_support.cmake:32 (file):
  file failed to open for writing (Permission denied):

    /home/icub/Desktop/robot/robotology-superbuild/build/src/casadi/language_tests/Fortran/CMakeLists.txt
Call Stack (most recent call first):
  CMakeLists.txt:93 (workaround_9220)


-- No flag needed for enabling C++11 features.
-- Configuring done
-- Generating done
-- Build files have been written to: /home/icub/Desktop/robot/robotology-superbuild/build/src/OsqpEigen
[ 73%] Performing build step for 'OsqpEigen'
-- Generating done
-- Build files have been written to: /home/icub/Desktop/robot/robotology-superbuild/build/src/CppAD
[ 18%] Built target qhull_r
[ 36%] Built target qhullstatic_r
[ 53%] Built target qhullstatic
[ 59%] Built target testqset
....
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/share/yarp/applications/eyesviewer-localhost.xml
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/share/yarp/applications/fakeye-localhost.xml
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/share/yarp/modules/fakeFrameGrabber.xml
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/share/yarp/modules/test_grabber.xml
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/share/yarp/contexts/yarpdataplayer/config.ini
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/share/yarp/templates/applications/yarpdatadumper.xml.template
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/share/yarp/templates/applications/yarpdataplayer.xml.template
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/share/yarp/applications/yarpdatadumperExample.xml
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/share/yarp/applications/yarpdataplayerExample.xml
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/share/bash-completion/completions/yarp
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/lib/cmake/YARP/YARPConfig.cmake
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/lib/cmake/YARP/YARPConfigVersion.cmake
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/lib/cmake/matioCpp/matioCppTargets-release.cmake
[ 63%] Completed 'matioCpp'
[ 66%] Built target matioCpp
[ 66%] Skipping update step for 'YARP_telemetry'
[ 68%] Performing configure step for 'YARP_telemetry'
Not searching for unused variables given on the command line.
loading initial cache file /home/icub/Desktop/robot/robotology-superbuild/build/src/YARP_telemetry/CMakeFiles/YCMTmp/YARP_telemetry-cache-Release.cmake
-- Found YCM: /home/icub/Desktop/robot/robotology-superbuild/build/install/share/cmake/YCM (found version "0.14.1~20220622")
-- Found YARP: /home/icub/Desktop/robot/robotology-superbuild/build/install/lib/cmake/YARP (found version "3.7.0~dev")
-- Fetching nlohmann_json...
make[3]: Entering directory '/exports/code/robotology-superbuild/build/src/YARP_telemetry/_deps/json-subbuild'
make[4]: Entering directory '/exports/code/robotology-superbuild/build/src/YARP_telemetry/_deps/json-subbuild'
make[5]: Entering directory '/exports/code/robotology-superbuild/build/src/YARP_telemetry/_deps/json-subbuild'
make[5]: Leaving directory '/exports/code/robotology-superbuild/build/src/YARP_telemetry/_deps/json-subbuild'
make[5]: Entering directory '/exports/code/robotology-superbuild/build/src/YARP_telemetry/_deps/json-subbuild'
[ 11%] Performing update step for 'json-populate'
CMake Error at /home/icub/Desktop/robot/robotology-superbuild/build/src/YARP_telemetry/_deps/json-subbuild/json-populate-prefix/tmp/json-populate-gitupdate.cmake:25 (message):
  Failed to get the hash for HEAD:

  fatal: unsafe repository
  ('/exports/code/robotology-superbuild/build/src/YARP_telemetry/_deps/json-src'
  is owned by someone else)

  To add an exception for this directory, call:

  

  	git config --global --add safe.directory
  /exports/code/robotology-superbuild/build/src/YARP_telemetry/_deps/json-src




make[5]: *** [CMakeFiles/json-populate.dir/build.make:130: json-populate-prefix/src/json-populate-stamp/json-populate-update] Error 1
make[5]: Leaving directory '/exports/code/robotology-superbuild/build/src/YARP_telemetry/_deps/json-subbuild'
make[4]: *** [CMakeFiles/Makefile2:83: CMakeFiles/json-populate.dir/all] Error 2
make[4]: Leaving directory '/exports/code/robotology-superbuild/build/src/YARP_telemetry/_deps/json-subbuild'
make[3]: *** [Makefile:91: all] Error 2
make[3]: Leaving directory '/exports/code/robotology-superbuild/build/src/YARP_telemetry/_deps/json-subbuild'

CMake Error at /usr/share/cmake-3.24/Modules/FetchContent.cmake:1572 (message):
  Build step for json failed: 2
Call Stack (most recent call first):
  /usr/share/cmake-3.24/Modules/FetchContent.cmake:1712:EVAL:2 (__FetchContent_directPopulate)
  /usr/share/cmake-3.24/Modules/FetchContent.cmake:1712 (cmake_language)
  CMakeLists.txt:82 (FetchContent_Populate)


-- Configuring incomplete, errors occurred!
See also "/home/icub/Desktop/robot/robotology-superbuild/build/src/YARP_telemetry/CMakeFiles/CMakeOutput.log".
See also "/home/icub/Desktop/robot/robotology-superbuild/build/src/YARP_telemetry/CMakeFiles/CMakeError.log".
make[2]: *** [CMakeFiles/YARP_telemetry.dir/build.make:95: src/YARP_telemetry/CMakeFiles/YCMStamp/YARP_telemetry-configure] Error 1
make[1]: *** [CMakeFiles/Makefile2:1921: CMakeFiles/YARP_telemetry.dir/all] Error 2
make: *** [Makefile:101: all] Error 2

In conclusion, thank you very much for your patience.

traversaro · 2022-06-22T12:30:46Z

spdlog problem

Beside the workaround you found, another fix is to just compiled spdlog as a shared library. However, why do you have a custom install of spdlog in /usr/local, instead of using the spdlog installed by apt?

fatal: unsafe repository error (is owned by someone else)

This is a problem that I never saw, I need to think about it.

traversaro · 2022-06-22T12:39:18Z

fatal: unsafe repository error (is owned by someone else)

This is a problem that I never saw, I need to think about it.

Did you added a symbolic link /home/icub/Desktop/robot/robotology-superbuild to /exports/code/robotology-superbuild ? Perhaps this can create problems.

SSSSamZhu · 2022-06-23T02:24:33Z

Hi @traveraro，

Beside the workaround you found, another fix is to just compiled spdlog as a shared library. However, why do you have a custom install of spdlog in /usr/local, instead of using the spdlog installed by apt?

At first I thought I was missing the dependency to install spdlog, so I installed a new spdlog in the root directory. Now it seems that this operation is a little redundant, it didn't work.

Did you added a symbolic link /home/icub/Desktop/robot/robotology-superbuild to /exports/code/robotology-superbuild ? Perhaps this can create problems.

Did you mean

cd  /home/icub/Desktop/robot/robotology-superbuild
ln -s  /exports/code/robotology-superbuild dist_file

(dist_file: The newly created link file)? But I haven't actually done anything like that.

traversaro · 2022-06-23T06:55:35Z

Beside the workaround you found, another fix is to just compiled spdlog as a shared library. However, why do you have a custom install of spdlog in /usr/local, instead of using the spdlog installed by apt?

At first I thought I was missing the dependency to install spdlog, so I installed a new spdlog in the root directory. Now it seems that this operation is a little redundant, it didn't work.

As you may have noticed, the operation of installing manually in /usr/local a different version of a library that is already installed by apt it not only redundant, can lead to errors. Please go to the build directory from which spdlog was installed, and uninstall it with (from https://gitlab.kitware.com/cmake/community/-/wikis/FAQ#can-i-do-make-uninstall-with-cmake):

xargs rm < install_manifest.txt

Then, make sure that libspdlog-dev is installed with:

sudo apt install libspdlog-dev

Notice that should be already done by the sudo bash ./scripts/install_apt_dependencies.sh step of the installation of the superbuild, are you sure you executed it?

For what regards the strange error related to YARP_telemetry, did you try to execute the workaround the error is suggesting, i.e.:

git config --global --add safe.directory /exports/code/robotology-superbuild/build/src/YARP_telemetry/_deps/json-src

?

SSSSamZhu · 2022-06-23T08:25:00Z

Hello @traveraro，
Thanks, it works !

For what regards the strange error related to YARP_telemetry, did you try to execute the workaround the error is suggesting, i.e.:
git config --global --add safe.directory /exports/code/robotology-superbuild/build/src/YARP_telemetry/_deps/json-src
?

After I repeat make a few times, theYARP_telemetryproblem doesn't appear on the terminal again. So I didn't do it again.
What I end up doing is

Create a file called cmake_uninstall.cmake.in in the top directory of the package with the following contents

if(NOT EXISTS "@CMAKE_BINARY_DIR@/install_manifest.txt")
  message(FATAL_ERROR "Cannot find install manifest: @CMAKE_BINARY_DIR@/install_manifest.txt")
endif()

file(READ "@CMAKE_BINARY_DIR@/install_manifest.txt" files)
string(REGEX REPLACE "\n" ";" files "${files}")
foreach(file ${files})
  message(STATUS "Uninstalling $ENV{DESTDIR}${file}")
  if(IS_SYMLINK "$ENV{DESTDIR}${file}" OR EXISTS "$ENV{DESTDIR}${file}")
    exec_program(
      "@CMAKE_COMMAND@" ARGS "-E remove \"$ENV{DESTDIR}${file}\""
      OUTPUT_VARIABLE rm_out
      RETURN_VALUE rm_retval
      )
    if(NOT "${rm_retval}" STREQUAL 0)
      message(FATAL_ERROR "Problem when removing $ENV{DESTDIR}${file}")
    endif()
  else(IS_SYMLINK "$ENV{DESTDIR}${file}" OR EXISTS "$ENV{DESTDIR}${file}")
    message(STATUS "File $ENV{DESTDIR}${file} does not exist.")
  endif()
endforeach()

There is a cmakelists. TXT file in the same directory, add the following at the end:

# uninstall target
if(NOT TARGET uninstall)
  configure_file(
    "${CMAKE_CURRENT_SOURCE_DIR}/cmake_uninstall.cmake.in"
    "${CMAKE_CURRENT_BINARY_DIR}/cmake_uninstall.cmake"
    IMMEDIATE @ONLY)

  add_custom_target(uninstall
    COMMAND ${CMAKE_COMMAND} -P ${CMAKE_CURRENT_BINARY_DIR}/cmake_uninstall.cmake)
endif()

Find the install_manifest.txt file, usually in the build folder, and execute in that directory
xargs rm < install_manifest.txt

4.Finally, delete the source code package

traversaro · 2022-06-23T08:46:59Z

Good to know @SSSSamZhu . For your own knoledge, for the uninstall the xargs rm < install_manifest.txt is sufficient, no need to to the step 1. and 2. .

If everything works, feel free to close the issue.

SSSSamZhu · 2022-06-23T09:28:31Z

Hello @traveraro，
Unfortunately, he had a problem verifying the installation.

Perhaps icub-main, which I compiled separately, caused the error. Can you tell me how to find this problem and deal with it? Does that mean I need to delete icub-main, etc., which I compiled separately before? Is it possible to fix this problem by modifying environment variables?

traversaro · 2022-06-23T09:59:25Z

Does that mean I need to delete icub-main, etc., which I compiled separately before?

That would be ideal, so you avoid the risk of mixing different versions of libraries that may not be ABI-compatible.

Is it possible to fix this problem by modifying environment variables?

You can try to remove any reference to manually build YARP, icub, etc etc from environment variables, but my suggestion is just to remove every library that you manually built, and re-run a clean build of the superbuild just to be sure. If you installed this libraries in a global location like /usr/local you can uninstall them using the same trick used with spdlog, i.e. xargs rm < install_manifest.txt.

traversaro · 2022-06-23T10:02:48Z

By the way, I noticed that the location of the custom built iCub is /home/roboverse/iCub/icub-main/build, are you mixing the use of two different users (roboverse and icub )? In that case, this could explain the "unsafe directory" problem we saw before.

SSSSamZhu · 2022-06-23T10:56:22Z

By the way, I noticed that the location of the custom built iCub is , are you mixing the use of two different users ( and )? In that case, this could explain the "unsafe directory" problem we saw before./home/roboverse/iCub/icub-main/build``roboverse``icub

The device's user name was changed once, from Roboverse to icub. I modified what I could find. But not quite.

You can try to remove any reference to manually build YARP, icub, etc etc from environment variables, but my suggestion is just to remove every library that you manually built, and re-run a clean build of the superbuild just to be sure. If you installed this libraries in a global location like /usr/local you can uninstall them using the same trick used with spdlog, i.e. xargs rm < install_manifest.txt.

Thanks, it works. It seems that the two installation methods are in conflict, and at first I was just going to use Conda to build in a separate environment.

Finally, thank you again

traversaro · 2022-06-23T12:01:59Z

Great!

SSSSamZhu · 2022-06-24T02:51:23Z

Morning @traveraro，

I'm so sorry, but there seem to be a few glitches to work out.
Now the terminal can run iCub_SIM, but when running yarpMotorGUI and YarpManager, there is an error in the picture 1&2.

Obviously this error has a lot to do with YARP. I tried to execute xargs rm < install_manifest.txt. in ~robot/yarp/build. However, the terminal report does not contain this file install_manifest.txt in build.

I have thought about the following reasons:

There was no TXT file when the build was generated, as shown in the third picture below (this is a screenshot from icUB standard configuration notebook)
As I mentioned before, the TXT file was overwritten when I recompiled, but because I failed to compile it, His cache in the system still exists, causing this problem.

traversaro · 2022-06-24T09:17:43Z

If there is no install_manifest.txt, probably you never installed it in the first place. Are you sure that you do not have any env variable that refer to the yarp/build directory? If you report the outpot of the env command I can help you to check.

SSSSamZhu · 2022-06-27T03:09:25Z

Morning @traveraro，
Thanks. The yarp environment variables here seem to be already under superbuild .

Setting up yarp and iCub env vars
icub@isaacliang-LC3:~$ env
SHELL=/bin/bash
ROS_VERSION=1
SESSION_MANAGER=local/isaacliang-LC3:@/tmp/.ICE-unix/4310,unix/isaacliang-LC3:/tmp/.ICE-unix/4310
GAZEBO_MASTER_URI=http://localhost:11345
QT_ACCESSIBILITY=1
COLORTERM=truecolor
XDG_CONFIG_DIRS=/etc/xdg/xdg-ubuntu:/etc/xdg
XDG_SESSION_PATH=/org/freedesktop/DisplayManager/Session0
XDG_MENU_PREFIX=gnome-
ROBOT_CODE=/usr/local/src/robot
GNOME_DESKTOP_SESSION_ID=this-is-deprecated
ROBOTOLOGY_SUPERBUILD_INSTALL_PREFIX=/home/icub/Desktop/robot/robotology-superbuild/build/install
PKG_CONFIG_PATH=/opt/ros/noetic/lib/pkgconfig
ROS_PYTHON_VERSION=3
LANGUAGE=en_GB:en
LC_ADDRESS=zh_CN.UTF-8
OBJ_SUBDIR=build
GNOME_SHELL_SESSION_MODE=ubuntu
LC_NAME=zh_CN.UTF-8
SSH_AUTH_SOCK=/run/user/1000/keyring/ssh
YARP_BUILD_DIR=/usr/local/src/robot/robotology-superbuild/build/src/YARP
YARP_ROBOT_NAME=iCubShenzhen01
XMODIFIERS=@im=ibus
ICUBcontrib_BUILD_DIR=/usr/local/src/robot/robotology-superbuild/build/src/ICUBcontrib
DESKTOP_SESSION=ubuntu
LC_MONETARY=zh_CN.UTF-8
SSH_AGENT_PID=4274
ROS_PACKAGE_PATH=/opt/ros/noetic/share:/home/icub/Desktop/robot/robotology-superbuild/build/install/share
CMAKE_BUILD_TYPE=Release
GTK_MODULES=gail:atk-bridge
ROSLISP_PACKAGE_DIRECTORIES=
PWD=/home/icub
LOGNAME=icub
XDG_SESSION_DESKTOP=ubuntu
XDG_SESSION_TYPE=x11
CFW2CANAPI_DIR=/lib/modules/5.14.0-1042-oem/iCubDrivers//cfw002/
GPG_AGENT_INFO=/run/user/1000/gnupg/S.gpg-agent:0:1
icub_firmware_shared_BUILD_DIR=/usr/local/src/robot/robotology-superbuild/build/src/icub_firmware_shared
ICUB_SOURCE_DIR=/usr/local/src/robot/robotology-superbuild/src/ICUB
XAUTHORITY=/home/icub/.Xauthority
XDG_GREETER_DATA_DIR=/var/lib/lightdm-data/icub
GJS_DEBUG_TOPICS=JS ERROR;JS LOG
GDM_LANG=zh_CN
HOME=/home/icub
IM_CONFIG_PHASE=1
GAZEBO_PLUGIN_PATH=/usr/lib/x86_64-linux-gnu/gazebo-11/plugins:/usr/lib/x86_64-linux-gnu/gazebo-11/plugins::/home/icub/Desktop/robot/robotology-superbuild/build/install/lib:/home/icub/Desktop/robot/robotology-superbuild/build/install/lib
LC_PAPER=zh_CN.UTF-8
LANG=en_GB.UTF-8
ROS_ETC_DIR=/opt/ros/noetic/etc/ros
GAZEBO_MODEL_DATABASE_URI=http://models.gazebosim.org
LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:
XDG_CURRENT_DESKTOP=ubuntu:GNOME
YARP_FORWARD_LOG_ENABLE=0
VTE_VERSION=6003
YARP_COLORED_OUTPUT=1
ICUBcontrib_DIR=/usr/local/src/robot/robotology-superbuild/src/icub-contrib-common
AMENT_PREFIX_PATH=/home/icub/Desktop/robot/robotology-superbuild/build/install:/home/icub/Desktop/robot/robotology-superbuild/build/install
CMAKE_PREFIX_PATH=/opt/ros/noetic:/home/icub/Desktop/robot/robotology-superbuild/build/install:/home/icub/Desktop/robot/robotology-superbuild/build/install
XDG_SEAT_PATH=/org/freedesktop/DisplayManager/Seat0
GNOME_TERMINAL_SCREEN=/org/gnome/Terminal/screen/102d6709_ccd1_4929_a9d0_8b181389c7f4
GAZEBO_RESOURCE_PATH=/usr/share/gazebo-11:/usr/share/gazebo-11::/home/icub/Desktop/robot/robotology-superbuild/build/install/share/gazebo/worlds:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/gazebo/worlds
INVOCATION_ID=3c0e10e689654fefb529b2bb44cd6ad3
MANAGERPID=3735
GJS_DEBUG_OUTPUT=stderr
ROBOTOLOGY_SUPERBUILD_SOURCE_DIR=/home/icub/Desktop/robot/robotology-superbuild
LESSCLOSE=/usr/bin/lesspipe %s %s
XDG_SESSION_CLASS=user
PYTHONPATH=/opt/ros/noetic/lib/python3/dist-packages
TERM=xterm-256color
LC_IDENTIFICATION=zh_CN.UTF-8
LESSOPEN=| /usr/bin/lesspipe %s
USER=icub
ROBOTOLOGY_SUPERBUILD_BUILD_DIR=/usr/local/src/robot/robotology-superbuild/build
GNOME_TERMINAL_SERVICE=:1.445
icub_firmware_shared_SOURCE_DIR=/usr/local/src/robot/robotology-superbuild/src/icub_firmware_shared
DISPLAY=:0
SHLVL=1
LC_TELEPHONE=zh_CN.UTF-8
ROS_MASTER_URI=http://localhost:11311
QT_IM_MODULE=ibus
LC_MEASUREMENT=zh_CN.UTF-8
BLOCKFACTORY_PLUGIN_PATH=/home/icub/Desktop/robot/robotology-superbuild/build/install/lib/blockfactory:/home/icub/Desktop/robot/robotology-superbuild/build/install/lib/blockfactory
ROBOTOLOGY_SUPERBUILD_INSTALL_DIR=/usr/local/src/robot/robotology-superbuild/build/install
PAPERSIZE=a4
YARP_VERBOSE_OUTPUT=0
YARP_TRACE_ENABLE=0
LD_LIBRARY_PATH=/opt/ros/noetic/lib:/home/icub/Desktop/robot/robotology-superbuild/build/install/lib:/usr/lib/x86_64-linux-gnu/gazebo-11/plugins::/home/icub/Desktop/robot/robotology-superbuild/build/install/lib:/usr/lib/x86_64-linux-gnu/gazebo-11/plugins:/usr/lib/x86_64-linux-gnu/gazebo-11/plugins::/home/icub/Desktop/robot/robotology-superbuild/build/install/lib
XDG_RUNTIME_DIR=/run/user/1000
YARP_SOURCE_DIR=/usr/local/src/robot/robotology-superbuild/src/YARP
LC_TIME=zh_CN.UTF-8
GAZEBO_MODEL_PATH=/usr/share/gazebo-11/models:/usr/share/gazebo-11/models::/home/icub/Desktop/robot/robotology-superbuild/build/install/share/gazebo/models:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/iCub/robots:/home/icub/Desktop/robot/robotology-superbuild/build/install/share:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/gazebo/models:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/iCub/robots:/home/icub/Desktop/robot/robotology-superbuild/build/install/share
JOURNAL_STREAM=8:68096
XDG_DATA_DIRS=/usr/share/ubuntu:/usr/local/share:/usr/share:/var/lib/snapd/desktop:/home/icub/Desktop/robot/robotology-superbuild/build/install/share:/home/icub/Desktop/robot/robotology-superbuild/build/install/share
YARP_DATA_DIRS=/home/icub/Desktop/robot/robotology-superbuild/build/install/share/yarp:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/iCub:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/ICUBcontrib:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/yarp:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/iCub:/home/icub/Desktop/robot/robotology-superbuild/build/install/share/ICUBcontrib
PATH=/opt/ros/noetic/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/icub/Desktop/robot/robotology-superbuild/build/install/bin:/home/icub/Desktop/robot/robotology-superbuild/build/install/bin
GDMSESSION=ubuntu
ICUB_BUILD_DIR=/usr/local/src/robot/robotology-superbuild/build/src/ICUB
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/1000/bus
ROS_ROOT=/opt/ros/noetic/share/ros
ROS_DISTRO=noetic
LC_NUMERIC=zh_CN.UTF-8
OGRE_RESOURCE_PATH=/usr/lib/x86_64-linux-gnu/OGRE-1.9.0
_=/usr/bin/env

traversaro · 2022-06-27T05:59:09Z

Indeed, it seems that there are no strange env variable. However, it is still possible to accidentally installed a YARP in /usr/local. As the problem is in the yarpmanager, probably we can start debugging that one. What is the output of:

ldd `which yarpmanager`

SSSSamZhu · 2022-06-27T06:23:25Z

Setting up yarp and iCub env vars
icub@isaacliang-LC3:~$ ldd `which yarpmanager`
	linux-vdso.so.1 (0x00007fffbdedc000)
	libYARP_init.so.3 => /home/icub/Desktop/robot/robotology-superbuild/build/install/lib/libYARP_init.so.3 (0x00007fd7d5708000)
	libQt5Widgets.so.5 => /lib/x86_64-linux-gnu/libQt5Widgets.so.5 (0x00007fd7d5023000)
	libQt5Gui.so.5 => /lib/x86_64-linux-gnu/libQt5Gui.so.5 (0x00007fd7d4a38000)
	libYARP_math.so.3 => /home/icub/Desktop/robot/robotology-superbuild/build/install/lib/libYARP_math.so.3 (0x00007fd7d49e6000)
	libYARP_sig.so.3 => /home/icub/Desktop/robot/robotology-superbuild/build/install/lib/libYARP_sig.so.3 (0x00007fd7d4997000)
	libtinyxml.so.2.6.2 => /lib/x86_64-linux-gnu/libtinyxml.so.2.6.2 (0x00007fd7d497d000)
	libYARP_companion.so.3 => /home/icub/Desktop/robot/robotology-superbuild/build/install/lib/libYARP_companion.so.3 (0x00007fd7d48f6000)
	libYARP_os.so.3 => /home/icub/Desktop/robot/robotology-superbuild/build/install/lib/libYARP_os.so.3 (0x00007fd7d4715000)
	libQt5Core.so.5 => /lib/x86_64-linux-gnu/libQt5Core.so.5 (0x00007fd7d41cc000)
	libstdc++.so.6 => /lib/x86_64-linux-gnu/libstdc++.so.6 (0x00007fd7d3fea000)
	libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007fd7d3e9b000)
	libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007fd7d3e7e000)
	libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fd7d3c8c000)
	libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007fd7d3c69000)
	libGL.so.1 => /lib/x86_64-linux-gnu/libGL.so.1 (0x00007fd7d3be1000)
	libpng16.so.16 => /lib/x86_64-linux-gnu/libpng16.so.16 (0x00007fd7d3ba9000)
	libz.so.1 => /lib/x86_64-linux-gnu/libz.so.1 (0x00007fd7d3b8d000)
	libharfbuzz.so.0 => /lib/x86_64-linux-gnu/libharfbuzz.so.0 (0x00007fd7d3a86000)
	libjpeg.so.8 => /lib/x86_64-linux-gnu/libjpeg.so.8 (0x00007fd7d3a01000)
	libsoxr.so.0 => /lib/x86_64-linux-gnu/libsoxr.so.0 (0x00007fd7d3996000)
	libavcodec.so.58 => /lib/x86_64-linux-gnu/libavcodec.so.58 (0x00007fd7d23d5000)
	libavutil.so.56 => /lib/x86_64-linux-gnu/libavutil.so.56 (0x00007fd7d22ac000)
	libedit.so.2 => /lib/x86_64-linux-gnu/libedit.so.2 (0x00007fd7d2272000)
	libACE-6.4.5.so => /lib/libACE-6.4.5.so (0x00007fd7d20dd000)
	/lib64/ld-linux-x86-64.so.2 (0x00007fd7d5937000)
	libicui18n.so.66 => /lib/x86_64-linux-gnu/libicui18n.so.66 (0x00007fd7d1dde000)
	libicuuc.so.66 => /lib/x86_64-linux-gnu/libicuuc.so.66 (0x00007fd7d1bf8000)
	libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007fd7d1bf2000)
	libpcre2-16.so.0 => /lib/x86_64-linux-gnu/libpcre2-16.so.0 (0x00007fd7d1b6f000)
	libdouble-conversion.so.3 => /lib/x86_64-linux-gnu/libdouble-conversion.so.3 (0x00007fd7d1b57000)
	libglib-2.0.so.0 => /lib/x86_64-linux-gnu/libglib-2.0.so.0 (0x00007fd7d1a2e000)
	libGLdispatch.so.0 => /lib/x86_64-linux-gnu/libGLdispatch.so.0 (0x00007fd7d1976000)
	libGLX.so.0 => /lib/x86_64-linux-gnu/libGLX.so.0 (0x00007fd7d1942000)
	libfreetype.so.6 => /lib/x86_64-linux-gnu/libfreetype.so.6 (0x00007fd7d1883000)
	libgraphite2.so.3 => /lib/x86_64-linux-gnu/libgraphite2.so.3 (0x00007fd7d1854000)
	libgomp.so.1 => /lib/x86_64-linux-gnu/libgomp.so.1 (0x00007fd7d1812000)
	libswresample.so.3 => /lib/x86_64-linux-gnu/libswresample.so.3 (0x00007fd7d17f0000)
	libvpx.so.6 => /lib/x86_64-linux-gnu/libvpx.so.6 (0x00007fd7d15b8000)
	libwebpmux.so.3 => /lib/x86_64-linux-gnu/libwebpmux.so.3 (0x00007fd7d15ac000)
	libwebp.so.6 => /lib/x86_64-linux-gnu/libwebp.so.6 (0x00007fd7d1542000)
	liblzma.so.5 => /lib/x86_64-linux-gnu/liblzma.so.5 (0x00007fd7d1517000)
	librsvg-2.so.2 => /lib/x86_64-linux-gnu/librsvg-2.so.2 (0x00007fd7d0bec000)
	libgobject-2.0.so.0 => /lib/x86_64-linux-gnu/libgobject-2.0.so.0 (0x00007fd7d0b8c000)
	libcairo.so.2 => /lib/x86_64-linux-gnu/libcairo.so.2 (0x00007fd7d0a69000)
	libzvbi.so.0 => /lib/x86_64-linux-gnu/libzvbi.so.0 (0x00007fd7d09da000)
	libsnappy.so.1 => /lib/x86_64-linux-gnu/libsnappy.so.1 (0x00007fd7d09cf000)
	libaom.so.0 => /lib/x86_64-linux-gnu/libaom.so.0 (0x00007fd7d052f000)
	libcodec2.so.0.9 => /lib/x86_64-linux-gnu/libcodec2.so.0.9 (0x00007fd7cf74b000)
	libgsm.so.1 => /lib/x86_64-linux-gnu/libgsm.so.1 (0x00007fd7cf73c000)
	libmp3lame.so.0 => /lib/x86_64-linux-gnu/libmp3lame.so.0 (0x00007fd7cf6c4000)
	libopenjp2.so.7 => /lib/x86_64-linux-gnu/libopenjp2.so.7 (0x00007fd7cf66e000)
	libopus.so.0 => /lib/x86_64-linux-gnu/libopus.so.0 (0x00007fd7cf60f000)
	libshine.so.3 => /lib/x86_64-linux-gnu/libshine.so.3 (0x00007fd7cf402000)
	libspeex.so.1 => /lib/x86_64-linux-gnu/libspeex.so.1 (0x00007fd7cf3e4000)
	libtheoraenc.so.1 => /lib/x86_64-linux-gnu/libtheoraenc.so.1 (0x00007fd7cf3a7000)
	libtheoradec.so.1 => /lib/x86_64-linux-gnu/libtheoradec.so.1 (0x00007fd7cf387000)
	libtwolame.so.0 => /lib/x86_64-linux-gnu/libtwolame.so.0 (0x00007fd7cf361000)
	libvorbis.so.0 => /lib/x86_64-linux-gnu/libvorbis.so.0 (0x00007fd7cf333000)
	libvorbisenc.so.2 => /lib/x86_64-linux-gnu/libvorbisenc.so.2 (0x00007fd7cf286000)
	libwavpack.so.1 => /lib/x86_64-linux-gnu/libwavpack.so.1 (0x00007fd7cf25a000)
	libx264.so.155 => /lib/x86_64-linux-gnu/libx264.so.155 (0x00007fd7cef9c000)
	libx265.so.179 => /lib/x86_64-linux-gnu/libx265.so.179 (0x00007fd7ce02e000)
	libxvidcore.so.4 => /lib/x86_64-linux-gnu/libxvidcore.so.4 (0x00007fd7cdf1b000)
	libva.so.2 => /lib/x86_64-linux-gnu/libva.so.2 (0x00007fd7cdef2000)
	libva-drm.so.2 => /lib/x86_64-linux-gnu/libva-drm.so.2 (0x00007fd7cdeeb000)
	libva-x11.so.2 => /lib/x86_64-linux-gnu/libva-x11.so.2 (0x00007fd7cdee3000)
	libvdpau.so.1 => /lib/x86_64-linux-gnu/libvdpau.so.1 (0x00007fd7cdedd000)
	libX11.so.6 => /lib/x86_64-linux-gnu/libX11.so.6 (0x00007fd7cdda0000)
	libdrm.so.2 => /lib/x86_64-linux-gnu/libdrm.so.2 (0x00007fd7cdd8a000)
	libOpenCL.so.1 => /usr/local/cuda/targets/x86_64-linux/lib/libOpenCL.so.1 (0x00007fd7cdb80000)
	libtinfo.so.6 => /lib/x86_64-linux-gnu/libtinfo.so.6 (0x00007fd7cdb50000)
	libbsd.so.0 => /lib/x86_64-linux-gnu/libbsd.so.0 (0x00007fd7cdb36000)
	librt.so.1 => /lib/x86_64-linux-gnu/librt.so.1 (0x00007fd7cdb2c000)
	libicudata.so.66 => /lib/x86_64-linux-gnu/libicudata.so.66 (0x00007fd7cc06b000)
	libpcre.so.3 => /lib/x86_64-linux-gnu/libpcre.so.3 (0x00007fd7cbff6000)
	libcairo-gobject.so.2 => /lib/x86_64-linux-gnu/libcairo-gobject.so.2 (0x00007fd7cbfea000)
	libgdk_pixbuf-2.0.so.0 => /lib/x86_64-linux-gnu/libgdk_pixbuf-2.0.so.0 (0x00007fd7cbfc2000)
	libgio-2.0.so.0 => /lib/x86_64-linux-gnu/libgio-2.0.so.0 (0x00007fd7cbde1000)
	libxml2.so.2 => /lib/x86_64-linux-gnu/libxml2.so.2 (0x00007fd7cbc27000)
	libpangocairo-1.0.so.0 => /lib/x86_64-linux-gnu/libpangocairo-1.0.so.0 (0x00007fd7cbc13000)
	libpango-1.0.so.0 => /lib/x86_64-linux-gnu/libpango-1.0.so.0 (0x00007fd7cbbc4000)
	libffi.so.7 => /lib/x86_64-linux-gnu/libffi.so.7 (0x00007fd7cbbb8000)
	libpixman-1.so.0 => /lib/x86_64-linux-gnu/libpixman-1.so.0 (0x00007fd7cbb11000)
	libfontconfig.so.1 => /lib/x86_64-linux-gnu/libfontconfig.so.1 (0x00007fd7cbaca000)
	libxcb-shm.so.0 => /lib/x86_64-linux-gnu/libxcb-shm.so.0 (0x00007fd7cbac5000)
	libxcb.so.1 => /lib/x86_64-linux-gnu/libxcb.so.1 (0x00007fd7cba99000)
	libxcb-render.so.0 => /lib/x86_64-linux-gnu/libxcb-render.so.0 (0x00007fd7cba8a000)
	libXrender.so.1 => /lib/x86_64-linux-gnu/libXrender.so.1 (0x00007fd7cb880000)
	libXext.so.6 => /lib/x86_64-linux-gnu/libXext.so.6 (0x00007fd7cb86b000)
	libogg.so.0 => /lib/x86_64-linux-gnu/libogg.so.0 (0x00007fd7cb85e000)
	libnuma.so.1 => /lib/x86_64-linux-gnu/libnuma.so.1 (0x00007fd7cb84f000)
	libXfixes.so.3 => /lib/x86_64-linux-gnu/libXfixes.so.3 (0x00007fd7cb847000)
	libgmodule-2.0.so.0 => /lib/x86_64-linux-gnu/libgmodule-2.0.so.0 (0x00007fd7cb841000)
	libmount.so.1 => /lib/x86_64-linux-gnu/libmount.so.1 (0x00007fd7cb7e1000)
	libselinux.so.1 => /lib/x86_64-linux-gnu/libselinux.so.1 (0x00007fd7cb7b6000)
	libresolv.so.2 => /lib/x86_64-linux-gnu/libresolv.so.2 (0x00007fd7cb798000)
	libpangoft2-1.0.so.0 => /lib/x86_64-linux-gnu/libpangoft2-1.0.so.0 (0x00007fd7cb77f000)
	libfribidi.so.0 => /lib/x86_64-linux-gnu/libfribidi.so.0 (0x00007fd7cb762000)
	libthai.so.0 => /lib/x86_64-linux-gnu/libthai.so.0 (0x00007fd7cb757000)
	libexpat.so.1 => /lib/x86_64-linux-gnu/libexpat.so.1 (0x00007fd7cb729000)
	libuuid.so.1 => /lib/x86_64-linux-gnu/libuuid.so.1 (0x00007fd7cb71e000)
	libXau.so.6 => /lib/x86_64-linux-gnu/libXau.so.6 (0x00007fd7cb718000)
	libXdmcp.so.6 => /lib/x86_64-linux-gnu/libXdmcp.so.6 (0x00007fd7cb710000)
	libblkid.so.1 => /lib/x86_64-linux-gnu/libblkid.so.1 (0x00007fd7cb6b9000)
	libpcre2-8.so.0 => /lib/x86_64-linux-gnu/libpcre2-8.so.0 (0x00007fd7cb629000)
	libdatrie.so.1 => /lib/x86_64-linux-gnu/libdatrie.so.1 (0x00007fd7cb61d000)
icub@isaacliang-LC3:~$

traversaro · 2022-06-27T06:46:29Z

Nothing strange here, I wonder if the segmentation fault is caused by something else and not by some incompatibility with a previously compiled YARP library.

SSSSamZhu · 2022-06-27T09:31:18Z

Hi @traveraro，

If there is no , probably you never installed it in the first place. Are you sure that you do not have any env variable that refer to the directory?

In fact, I confirm that YARP has been compiled and installed separately. I remember that yarpmanager could be run directly at that time .Although YARP directly seen in the terminal is version 3.7 under Superbuild, so I think that YARP compiled separately before (version 3.6) affects YARP under Superbuild.

Nothing strange here, I wonder if the segmentation fault is caused by something else and not by some incompatibility with a previously compiled YARP library.

Could it be that we're missing something that needs to be configured?

traversaro · 2022-06-27T11:56:27Z

If there is no , probably you never installed it in the first place. Are you sure that you do not have any env variable that refer to the directory?

In fact, I confirm that YARP has been compiled and installed separately. I remember that yarpmanager could be run directly at that time .Although YARP directly seen in the terminal is version 3.7 under Superbuild, so I think that YARP compiled separately before (version 3.6) affects YARP under Superbuild.

Ok, in that case can you open a terminal without sourcing the setup.sh of the robotology-superbuild (for example modifying the .bashrc if you have that there), and run which yarp or something similar? This should point us to the other YARP installation if this is true.

SSSSamZhu · 2022-06-27T12:36:12Z

The original 3.6.0 version of YARP doesn't seem to open anymore ,So far all points to superbuild YARP .

icub@isaacliang-LC3:~$ which yarp
/usr/local/bin/yarp

SSSSamZhu · 2022-06-28T03:37:48Z

Hi @traveraro，
When I start compiling again, I seem to encounter an error again. However, the terminal error seems to be related to iDynTree. I was surprised to see a non-exist error on the terminal

Install the project...
-- Install configuration: "Release"
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/lib/libOsqpEigen.so.0.7.0
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/lib/libOsqpEigen.so
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/include/OsqpEigen/OsqpEigen.h
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/include/OsqpEigen/Constants.hpp
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/include/OsqpEigen/SparseMatrixHelper.hpp
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/include/OsqpEigen/SparseMatrixHelper.tpp
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/include/OsqpEigen/Data.hpp
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/include/OsqpEigen/Data.tpp
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/include/OsqpEigen/Settings.hpp
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/include/OsqpEigen/Solver.hpp
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/include/OsqpEigen/Solver.tpp
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/include/OsqpEigen/Debug.hpp
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/lib/cmake/OsqpEigen/OsqpEigenConfigVersion.cmake
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/lib/cmake/OsqpEigen/OsqpEigenConfig.cmake
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/lib/cmake/OsqpEigen/OsqpEigenTargets.cmake
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/lib/cmake/OsqpEigen/OsqpEigenTargets-release.cmake
-- Up-to-date: /home/icub/Desktop/robot/robotology-superbuild/build/install/share/cmake/osqp-eigen/package.xml
[ 31%] Completed 'OsqpEigen'
[ 33%] Built target OsqpEigen
[ 33%] Skipping update step for 'iDynTree'
[ 33%] Performing configure step for 'iDynTree'
Not searching for unused variables given on the command line.
loading initial cache file /home/icub/Desktop/robot/robotology-superbuild/build/src/iDynTree/CMakeFiles/YCMTmp/iDynTree-cache-Release.cmake
CMake Error at /usr/local/lib/cmake/YARP/YARPConfig.cmake:40 (message):
  File or directory /usr/local/share/yarp referenced by variable
  YARP_DATA_INSTALL_DIR_FULL does not exist !
Call Stack (most recent call first):
  /usr/local/lib/cmake/YARP/YARPConfig.cmake:97 (set_and_check)
  cmake/iDynTreeDependencies.cmake:37 (find_package)
  cmake/iDynTreeDependencies.cmake:69 (idyntree_handle_dependency)
  CMakeLists.txt:39 (include)


-- Configuring incomplete, errors occurred!
See also "/home/icub/Desktop/robot/robotology-superbuild/build/src/iDynTree/CMakeFiles/CMakeOutput.log".
make[2]: *** [CMakeFiles/iDynTree.dir/build.make:93: src/iDynTree/CMakeFiles/YCMStamp/iDynTree-configure] Error 1
make[1]: *** [CMakeFiles/Makefile2:1441: CMakeFiles/iDynTree.dir/all] Error 2
make: *** [Makefile:101: all] Error 2

traversaro · 2022-06-28T07:20:46Z

It seems that the installation of YARP in /usr/local is corrupted. If you are sure that installation is coming from a YARP 3.6.0, what I suggest to cleanup the system is to re-install a YARP 3.6.0 build in /usr/local , and then uninstall the files with xargs rm < install_manifest.txt. At this point, probably it is a good idea to also remove all the build directories you are having problem with, such as the iDynTree one here.

SSSSamZhu · 2022-06-29T03:44:36Z

If you are sure that installation is coming from a YARP 3.6.0, what I suggest to cleanup the system is to re-install a YARP 3.6.0 build in , and then uninstall the files with

This is what I intended to do at first, but when I recompiled the source file, he reported this error again. So I can't compile.
Refer to the steps here : https://www.yarp.it/latest//install_yarp_linux.html


--  [ ]   Plugin: yarpmod_grabber (ENABLE_yarpmod_grabber)
--  [ ]   Plugin: yarpmod_fakeMotor (ENABLE_yarpmod_fakeMotor)
--  [ ]   Plugin: yarpmod_test_motor (ENABLE_yarpmod_test_motor)
--  [ ] Bindings (YARP_COMPILE_BINDINGS)
--  [ ]   Java bindings (CREATE_JAVA)
--  [ ]   Python bindings (CREATE_PYTHON)
--  [ ]   Perl bindings (CREATE_PERL)
--  [ ]   CSharp bindings (CREATE_CSHARP)
--  [ ]   TCL bindings (CREATE_TCL)
--  [ ]   Ruby bindings (CREATE_RUBY)
--  [ ]   Lua bindings (CREATE_LUA)
--  [ ]   Octave bindings (CREATE_OCTAVE)
-- Configuring done
-- Generating done
-- Build files have been written to: /home/icub/Desktop/robot/yarp/build
icub@isaacliang-LC3:~/Desktop/robot/yarp/build$ make
[  0%] Building CXX object extern/xmlrpcpp/CMakeFiles/YARP_priv_xmlrpcpp.dir/xmlrpcpp/src/base64.cpp.o
[  0%] Building CXX object extern/xmlrpcpp/CMakeFiles/YARP_priv_xmlrpcpp.dir/xmlrpcpp/src/XmlRpcClient.cpp.o
[  0%] Building CXX object extern/xmlrpcpp/CMakeFiles/YARP_priv_xmlrpcpp.dir/xmlrpcpp/src/XmlRpcServerConnection.cpp.o
....
[ 16%] Built target YARP_init
[ 16%] Building CXX object src/yarpidl_rosmsg/CMakeFiles/yarpidl_rosmsg.dir/src/main.cpp.o
[ 16%] Building CXX object src/yarpidl_rosmsg/CMakeFiles/yarpidl_rosmsg.dir/src/RosType.cpp.o
[ 16%] Building CXX object src/yarpidl_rosmsg/CMakeFiles/yarpidl_rosmsg.dir/src/RosTypeCodeGenYarp.cpp.o
[ 16%] Building C object src/yarpidl_rosmsg/CMakeFiles/yarpidl_rosmsg.dir/__/__/extern/md5/md5.c.o
[ 16%] Linking CXX executable ../../bin/yarpidl_rosmsg
[ 16%] Built target yarpidl_rosmsg
[ 16%] Generating code from ../../../extern/ros/geometry2/tf2_msgs/msg/TF2Error.msg
Failed to open tf2_msgs_TF2Error.h for writing
make[2]: *** [src/libYARP_rosmsg/src/CMakeFiles/YARP_rosmsg_gen_tf2_msgs.dir/build.make:105: src/libYARP_rosmsg/src/yarp/rosmsg/tf2_msgs/TF2Error.h] Error 1
make[1]: *** [CMakeFiles/Makefile2:4524: src/libYARP_rosmsg/src/CMakeFiles/YARP_rosmsg_gen_tf2_msgs.dir/all] Error 2
make: *** [Makefile:156: all] Error 2
icub@isaacliang-LC3:~/Desktop/robot/yarp/build$

traversaro · 2022-06-29T06:21:13Z

Are you sure you have space in the disk?

SSSSamZhu · 2022-06-29T06:28:00Z

Sure, we still have 200 gigabytes of disk capacity .

traversaro · 2022-06-29T07:32:20Z

Then I am not sure what could be the problem, as the superbuild instead works correctly. Are you sure that you have a clean environment, i.e. you do not source setup.sh from the superbuild?

You could also try to use a different build directory, or clone the yarp repo completly in another location.

SSSSamZhu · 2022-06-29T09:56:47Z

Are you sure that you have a clean environment, i.e. you do not source from the superbuild?setup.sh

You are right, because I already executed these commands when I compiled YARP separately from the root directory. Thank you for your warning.
https://icub-tech-iit.github.io/documentation/icub_operating_systems/icubos/user-env/?h=env
So I changed the environment variable of superbuild into one that compiles YARP alone, and successfully installed yarp that compiles yarp alone. If nothing else, I confirm that the separately compiled YARP is completely uninstalled

Setting up yarp and iCub env vars
icub@isaacliang-LC3:~/Desktop/robot/yarp/build$ sudo xargs rm < install_manifest.txt
[sudo] password for icub: 
rm: cannot remove '/usr/local/include/yarp/os/ConstString.h': No such file or directory
icub@isaacliang-LC3:~/Desktop/robot/yarp/build$ sudo xargs rm < install_manifest.txt
rm: cannot remove '/usr/local/share/yarp/cmake/YarpPlugin.cmake': No such file or directory
rm: cannot remove '/usr/local/share/yarp/cmake/YarpIDL.cmake': No such file or directory
rm: cannot remove '/usr/local/share/yarp/cmake/YarpInstallationHelpers.cmake': No such file or directory
rm: cannot remove '/usr/local/share/yarp/cmake/YarpPrintFeature.cmake': No such file or directory
rm: cannot remove '/usr/local/share/yarp/cmake/YarpDeprecatedOption.cmake': No such file or directory
rm: cannot remove '/usr/local/share/yarp/cmake/template/yarp_plugin_carrier.cpp.in': No such file or directory
rm: cannot remove '/usr/local/share/yarp/cmake/template/yarp_plugin_RFModule.cpp.in': No such file or directory
rm: cannot remove '/usr/local/share/yarp/cmake/template/yarp_plugin_device.cpp.in': No such file or directory
rm: cannot remove '/usr/local/share/yarp/cmake/template/yarp_plugin_portmonitor.cpp.in': No such file or directory
rm: cannot remove '/usr/local/share/yarp/cmake/template/yarp_plugin_library.cpp.in': No such file or directory
rm: cannot remove '/usr/local/share/yarp/cmake/template/yarp_plugin_yarpdev_main.cpp.in': No such file or directory
rm: cannot remove '/usr/local/lib/libYARP_priv_xmlrpcpp.a': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_priv_xmlrpcpp/YARP_priv_xmlrpcppConfigVersion.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_priv_xmlrpcpp/YARP_priv_xmlrpcppConfig.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_priv_xmlrpcpp/YARP_priv_xmlrpcppTargets.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_priv_xmlrpcpp/YARP_priv_xmlrpcppTargets-release.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/libYARP_priv_qgvcore.a': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_priv_qgvcore/YARP_priv_qgvcoreConfigVersion.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_priv_qgvcore/YARP_priv_qgvcoreConfig.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_priv_qgvcore/YARP_priv_qgvcoreTargets.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_priv_qgvcore/YARP_priv_qgvcoreTargets-release.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/libYARP_priv_hmac.a': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_priv_hmac/YARP_priv_hmacConfigVersion.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_priv_hmac/YARP_priv_hmacConfig.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_priv_hmac/YARP_priv_hmacTargets.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_priv_hmac/YARP_priv_hmacTargets-release.cmake': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/yarp.ini': No such file or directory
rm: cannot remove '/usr/local/include/yarp/conf/dirs.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/conf/string.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/conf/filesystem.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/conf/environment.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/conf/system.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/conf/options.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/conf/compiler.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/conf/api.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/conf/version.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/conf/numeric.h': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_conf/YARP_confConfigVersion.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_conf/YARP_confConfig.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_conf/YARP_confTargets.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/libYARP_os.so.3.6.0': No such file or directory
rm: cannot remove '/usr/local/lib/libYARP_os.so.3': No such file or directory
rm: cannot remove '/usr/local/lib/libYARP_os.so': No such file or directory
rm: cannot remove '/usr/local/include/yarp/os/impl/AuthHMAC.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/os/impl/BottleImpl.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/os/impl/BufferedConnectionWriter.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/os/impl/ConnectionRecorder.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/os/impl/DgramTwoWayStream.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/os/impl/Dispatcher.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/os/impl/FakeFace.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/os/impl/FakeTwoWayStream.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/os/impl/FallbackNameClient.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/os/impl/FallbackNameServer.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/os/impl/HttpCarrier.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/os/impl/LocalCarrier.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/os/impl/LogComponent.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/os/impl/LogForwarder.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/os/impl/McastCarrier.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/os/impl/MemoryOutputStream.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/os/impl/NameClient.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/os/impl/NameConfig.h': No such file or directory
rm: cannot remove '/usr/local/include/yarp/os/impl/NameserCarrier.h': No such file or directory
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rm: cannot remove '/usr/local/lib/cmake/YARP_wire_rep_utils/YARP_wire_rep_utilsConfig.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_wire_rep_utils/YARP_wire_rep_utilsTargets.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_wire_rep_utils/YARP_wire_rep_utilsTargets-release.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_shmem.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/shmem.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_xmlrpc.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/xmlrpc.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_tcpros.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/tcpros.ini': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/rossrv.ini': No such file or directory
rm: cannot remove '/usr/local/bin/yarpros': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_bayer.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/bayer.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_priority.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/priority.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_portmonitor.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/portmonitor.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_unix.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/unix_stream.ini': No such file or directory
rm: cannot remove '/usr/local/lib/libyarpcar.so': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_yarpcar/YARP_yarpcarConfigVersion.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_yarpcar/YARP_yarpcarConfig.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_yarpcar/YARP_yarpcarTargets.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_yarpcar/YARP_yarpcarTargets-release.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_pm_rpc_monitor.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/rpc_monitor.ini': No such file or directory
rm: cannot remove '/usr/local/lib/libyarppm.so': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_yarppm/YARP_yarppmConfigVersion.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_yarppm/YARP_yarppmConfig.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_yarppm/YARP_yarppmTargets.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_yarppm/YARP_yarppmTargets-release.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_AudioPlayerWrapper.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/AudioPlayerWrapper.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_AudioRecorderWrapper.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/AudioRecorderWrapper.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_audioFromFileDevice.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/audioFromFileDevice.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_audioToFileDevice.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/audioToFileDevice.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_frameTransformClient.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/frameTransformClient.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_frameTransformGet_nws_yarp.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/frameTransformGet_nws_yarp.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_frameTransformGet_nwc_yarp.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/frameTransformGet_nwc_yarp.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_frameTransformGet_nwc_ros.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/frameTransformGet_nwc_ros.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_frameTransformGetMultiplexer.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/frameTransformGetMultiplexer.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_frameTransformServer.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/frameTransformServer.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_frameTransformSet_nws_yarp.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/frameTransformSet_nws_yarp.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_frameTransformSet_nwc_yarp.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/frameTransformSet_nwc_yarp.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_frameTransformSet_nwc_ros.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/frameTransformSet_nwc_ros.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_frameTransformSetMultiplexer.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/frameTransformSetMultiplexer.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_frameTransformStorage.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/frameTransformStorage.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_transformClient.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/transformClient.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_transformServer.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/transformServer.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_fakeFrameGrabber.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/fakeFrameGrabber.ini': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/test_grabber.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_batteryClient.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/batteryClient.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_batteryWrapper.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/batteryWrapper.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_Rangefinder2DWrapper.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/Rangefinder2DWrapper.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_rangefinder2D_nws_yarp.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/rangefinder2D_nws_yarp.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_rangefinder2D_nws_ros.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/rangefinder2D_nws_ros.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_multipleanalogsensorsserver.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/multipleanalogsensorsserver.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_multipleanalogsensorsclient.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/multipleanalogsensorsclient.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_multipleanalogsensorsremapper.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/multipleanalogsensorsremapper.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_IMURosPublisher.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/IMURosPublisher.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_WrenchStampedRosPublisher.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/WrenchStampedRosPublisher.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_TemperatureRosPublisher.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/TemperatureRosPublisher.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_PoseStampedRosPublisher.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/PoseStampedRosPublisher.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_MagneticFieldRosPublisher.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/MagneticFieldRosPublisher.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_localization2DClient.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/localization2DClient.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_localization2D_nwc_yarp.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/localization2D_nwc_yarp.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_localization2DServer.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/localization2DServer.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_localization2D_nws_yarp.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/localization2D_nws_yarp.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_localization2D_nws_ros.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/localization2D_nws_ros.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_map2DClient.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/map2DClient.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_map2D_nwc_yarp.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/map2D_nwc_yarp.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_map2DServer.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/map2DServer.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_map2D_nws_yarp.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/map2D_nws_yarp.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_map2D_nws_ros.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/map2D_nws_ros.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_map2DStorage.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/map2DStorage.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_navigation2DClient.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/navigation2DClient.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_navigation2D_nwc_yarp.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/navigation2D_nwc_yarp.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_navigation2DServer.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/navigation2DServer.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_navigation2D_nws_yarp.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/navigation2D_nws_yarp.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_Rangefinder2DClient.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/Rangefinder2DClient.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_group.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/group.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_pipe.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/pipe.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_serial.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/serial.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_remote_grabber.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/remote_grabber.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_frameGrabber_nwc_yarp.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/frameGrabber_nwc_yarp.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_remote_controlboard.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/remote_controlboard.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_analogsensorclient.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/analogsensorclient.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_analogServer.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/analogServer.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_virtualAnalogServer.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/virtualAnalogServer.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_RGBDSensorClient.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/RGBDSensorClient.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_inertial.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/inertial.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_RGBDSensorWrapper.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/RGBDSensorWrapper.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_rgbdSensor_nws_yarp.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/rgbdSensor_nws_yarp.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_rgbdSensor_nws_ros.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/rgbdSensor_nws_ros.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_rgbdToPointCloudSensor_nws_ros.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/rgbdToPointCloudSensor_nws_ros.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_controlboardwrapper2.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/controlboardwrapper2.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_controlBoard_nws_yarp.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/controlBoard_nws_yarp.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_controlBoard_nws_ros.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/controlBoard_nws_ros.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_controlboardremapper.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/controlboardremapper.ini': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/remotecontrolboardremapper.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_robotDescriptionClient.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/robotDescriptionClient.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_robotDescriptionServer.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/robotDescriptionServer.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_grabberDual.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/grabberDual.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_frameGrabber_nws_yarp.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/frameGrabber_nws_yarp.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_frameGrabber_nws_ros.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/frameGrabber_nws_ros.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_JoypadControlClient.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/JoypadControlClient.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_JoypadControlServer.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/JoypadControlServer.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_frameGrabberCropper.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/frameGrabberCropper.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_mobileBaseVelocityControl_nwc_yarp.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/mobileBaseVelocityControl_nwc_yarp.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_mobileBaseVelocityControl_nws_yarp.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/mobileBaseVelocityControl_nws_yarp.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_mobileBaseVelocityControl_nws_ros.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/mobileBaseVelocityControl_nws_ros.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_odometry2D_nws_yarp.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/odometry2D_nws_yarp.ini': No such file or directory
rm: cannot remove '/usr/local/lib/yarp/yarp_odometry2D_nws_ros.so': No such file or directory
rm: cannot remove '/usr/local/share/yarp/plugins/odometry2D_nws_ros.ini': No such file or directory
rm: cannot remove '/usr/local/lib/libyarpmod.so': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_yarpmod/YARP_yarpmodConfigVersion.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_yarpmod/YARP_yarpmodConfig.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_yarpmod/YARP_yarpmodTargets.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_yarpmod/YARP_yarpmodTargets-release.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/libYARP_init.so.3.6.0': No such file or directory
rm: cannot remove '/usr/local/lib/libYARP_init.so.3': No such file or directory
rm: cannot remove '/usr/local/lib/libYARP_init.so': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_os/YARP_osConfigVersion.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_os/YARP_osConfig.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_os/YARP_osTargets.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_os/YARP_osTargets-release.cmake': No such file or directory
rm: cannot remove '/usr/local/bin/yarpidl_thrift': No such file or directory
rm: cannot remove '/usr/local/bin/yarpidl_rosmsg': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_idl_tools/YARP_idl_toolsConfigVersion.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_idl_tools/YARP_idl_toolsConfig.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_idl_tools/YARP_idl_toolsTargets.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP_idl_tools/YARP_idl_toolsTargets-release.cmake': No such file or directory
rm: cannot remove '/usr/local/bin/yarpserver': No such file or directory
rm: cannot remove '/usr/local/bin/yarp': No such file or directory
rm: cannot remove '/usr/local/bin/yarp-config': No such file or directory
rm: cannot remove '/usr/local/bin/yarprun': No such file or directory
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rm: cannot remove '/usr/local/bin/yarpdev': No such file or directory
rm: cannot remove '/usr/local/bin/yarprobotinterface': No such file or directory
rm: cannot remove '/usr/local/bin/yarpmanager-console': No such file or directory
rm: cannot remove '/usr/local/bin/yarplogger-console': No such file or directory
rm: cannot remove '/usr/local/bin/yarpdataplayer-console': No such file or directory
rm: cannot remove '/usr/local/bin/yarpdatadumper': No such file or directory
rm: cannot remove '/usr/local/share/yarp/scripts/yarpdatadumperAppGenerator.py': No such file or directory
rm: cannot remove '/usr/local/lib/qt5/qml/robotology/yarp/view/libQtYARPViewPlugin.so': No such file or directory
rm: cannot remove '/usr/local/lib/qt5/qml/robotology/yarp/view/qmldir': No such file or directory
rm: cannot remove '/usr/local/bin/yarpview': No such file or directory
rm: cannot remove '/usr/local/share/yarp/modules/yarpview.xml': No such file or directory
rm: cannot remove '/usr/local/lib/qt5/qml/robotology/yarp/scope/libQtYARPScopePlugin.so': No such file or directory
rm: cannot remove '/usr/local/lib/qt5/qml/robotology/yarp/scope/qmldir': No such file or directory
rm: cannot remove '/usr/local/bin/yarpscope': No such file or directory
rm: cannot remove '/usr/local/share/yarp/modules/yarpscope.xml': No such file or directory
rm: cannot remove '/usr/local/bin/yarpmanager': No such file or directory
rm: cannot remove '/usr/local/bin/yarplogger': No such file or directory
rm: cannot remove '/usr/local/bin/yarpdataplayer': No such file or directory
rm: cannot remove '/usr/local/bin/yarpmotorgui': No such file or directory
rm: cannot remove '/usr/local/share/yarp/modules/yarpmotorgui.xml': No such file or directory
rm: cannot remove '/usr/local/bin/yarpbatterygui': No such file or directory
rm: cannot remove '/usr/local/bin/yarpmobilebasegui': No such file or directory
rm: cannot remove '/usr/local/bin/yarplaserscannergui': No such file or directory
rm: cannot remove '/usr/local/bin/yarpviz': No such file or directory
rm: cannot remove '/usr/local/share/yarp/contexts/yarpviz/portrate.lua': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/CMakeLists.txt': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/yarp.i': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/macrosForMultipleAnalogSensors.i': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/vectors_fromTo_matlab.i': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/README.md': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/CMakeLists.txt': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/src/LoadYarp.java': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/src/YarpImageHelper.java': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/examples/matlab/simulink/yarpReadDoubles.mdl': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/examples/matlab/simulink/license.txt': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/examples/matlab/simulink/yarpWriteDoubles.mdl': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/examples/matlab/simulink/sfun_time.c': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/examples/matlab/simulink/utility.mdl': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/examples/matlab/simulink/yarpRemotePosEnc.mdl': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/examples/matlab/simulink/yarpReadDoubles_sfun.m': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/examples/matlab/simulink/yarpRemotePosEnc_sfun.m': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/examples/matlab/simulink/README.txt': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/examples/matlab/simulink/yarpPipes.png': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/examples/matlab/simulink/yarpWriteDoubles_sfun.m': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/examples/matlab/images.m': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/examples/matlab/yarp_write.m': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/examples/matlab/FastImageConversion.m': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/examples/matlab/yarp_read.m': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/examples/matlab/README.txt': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/examples/Example2.java': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/examples/Example4.java': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/examples/Example1.java': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/java/examples/Example3.java': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/python/CMakeLists.txt': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/python/tests/test_thread.py': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/python/tests/test_load.py': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/python/tests/CMakeLists.txt': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/python/tests/test_vector.py': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/python/tests/test_buffered_port.py': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/python/tests/test_image.py': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/python/examples/yarpImage.py': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/python/examples/example_callback.py': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/python/examples/example_server.py': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/python/examples/example_enc.py': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/python/examples/example_img.py': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/python/examples/example.py': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/perl/CMakeLists.txt': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/perl/examples/example2.pl': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/perl/examples/example.pl': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/csharp/CMakeLists.txt': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/csharp/tests/TestStamp.cs': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/csharp/tests/CMakeLists.txt': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/csharp/tests/TestString.cs': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/csharp/tests/run.sh': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/csharp/examples/example.cs': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/tcl/CMakeLists.txt': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/tcl/examples/example.tcl': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/ruby/CMakeLists.txt': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/ruby/tests/CMakeLists.txt': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/ruby/tests/test_buffered_port.rb': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/ruby/tests/test_image.rb': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/ruby/tests/test_vector.rb': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/ruby/examples/example.rb': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/lua/argcargv.i': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/lua/CMakeLists.txt': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/lua/tests/test_port.lua': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/lua/tests/test_image.lua': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/lua/tests/test_bottle_and_property.lua': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/lua/tests/CMakeLists.txt': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/lua/tests/test_time_delay.lua': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/lua/tests/test_vocab.lua': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/lua/tests/test_vector.lua': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/lua/tests/test_resource_finder.lua': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/lua/examples/example.lua': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/lua/examples/driver_qos.lua': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/lua/examples/example2.lua': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/octave/CMakeLists.txt': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/octave/examples/example.m': No such file or directory
rm: cannot remove '/usr/local/share/yarp/bindings/octave/examples/example_img.m': No such file or directory
rm: cannot remove '/usr/local/share/yarp/templates/applications/eyesviewer-cluster.xml.template': No such file or directory
rm: cannot remove '/usr/local/share/yarp/applications/eyesviewer-localhost.xml': No such file or directory
rm: cannot remove '/usr/local/share/yarp/applications/fakeye-localhost.xml': No such file or directory
rm: cannot remove '/usr/local/share/yarp/modules/fakeFrameGrabber.xml': No such file or directory
rm: cannot remove '/usr/local/share/yarp/modules/test_grabber.xml': No such file or directory
rm: cannot remove '/usr/local/share/yarp/contexts/yarpdataplayer/config.ini': No such file or directory
rm: cannot remove '/usr/local/share/yarp/templates/applications/yarpdatadumper.xml.template': No such file or directory
rm: cannot remove '/usr/local/share/yarp/templates/applications/yarpdataplayer.xml.template': No such file or directory
rm: cannot remove '/usr/local/share/yarp/applications/yarpdatadumperExample.xml': No such file or directory
rm: cannot remove '/usr/local/share/yarp/applications/yarpdataplayerExample.xml': No such file or directory
rm: cannot remove '/usr/local/share/bash-completion/completions/yarp': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP/YARPConfig.cmake': No such file or directory
rm: cannot remove '/usr/local/lib/cmake/YARP/YARPConfigVersion.cmake': No such file or directory
icub@isaacliang-LC3:~/Desktop/robot/yarp/build$

Unfortunately, it doesn't seem to solve the superbuild problem completely. The terminal reported the following error .
(Before compiling the superbuild file, I have source the superbuild-specific environment variable file.)

[ 31%] Completed 'OsqpEigen'
[ 33%] Built target OsqpEigen
[ 33%] Skipping update step for 'iDynTree'
[ 33%] Performing configure step for 'iDynTree'
Not searching for unused variables given on the command line.
loading initial cache file /home/icub/Desktop/robot/robotology-superbuild/build/src/iDynTree/CMakeFiles/YCMTmp/iDynTree-cache-Release.cmake
CMake Error at /usr/local/lib/x86_64-linux-gnu/cmake/YARP_idl_tools/YARP_idl_toolsTargets.cmake:74 (message):
  The imported target "YARP::yarpidl_thrift" references the file

     "/usr/local/bin/yarpidl_thrift"

  but this file does not exist.  Possible reasons include:

  * The file was deleted, renamed, or moved to another location.

  * An install or uninstall procedure did not complete successfully.

  * The installation package was faulty and contained

     "/usr/local/lib/x86_64-linux-gnu/cmake/YARP_idl_tools/YARP_idl_toolsTargets.cmake"

  but not all the files it references.

Call Stack (most recent call first):
  /usr/local/lib/x86_64-linux-gnu/cmake/YARP_idl_tools/YARP_idl_toolsConfig.cmake:14 (include)
  /usr/local/lib/x86_64-linux-gnu/cmake/YARP/YARPConfig.cmake:194 (find_package)
  cmake/iDynTreeDependencies.cmake:37 (find_package)
  cmake/iDynTreeDependencies.cmake:69 (idyntree_handle_dependency)
  CMakeLists.txt:39 (include)


-- Configuring incomplete, errors occurred!
See also "/home/icub/Desktop/robot/robotology-superbuild/build/src/iDynTree/CMakeFiles/CMakeOutput.log".
make[2]: *** [CMakeFiles/iDynTree.dir/build.make:93: src/iDynTree/CMakeFiles/YCMStamp/iDynTree-configure] Error 1
make[1]: *** [CMakeFiles/Makefile2:1441: CMakeFiles/iDynTree.dir/all] Error 2
make: *** [Makefile:101: all] Error 2

traversaro · 2022-06-29T10:01:53Z

For some reason the system installed YARP installed its cmake files in /usr/local/lib/x86_64-linux-gnu/cmake instead of `/usr/local/lib/cmake``, no idea why. Probably at this point it is easier to manually remove this files, i.e. :

cd 
/usr/local/lib/x86_64-linux-gnu/cmake
sudo rm -r ./YARP
sudo rm -r ./YARP_*

After this, you can check if your /usr/local directory is clean by doing:

find /usr/local | grep YARP
find /usr/local | grep yarp
find /usr/local | grep Yarp

If nothing is printed, we are good. Otherwise, probably the files listed will need to be removed manually as well.

SSSSamZhu · 2022-06-30T07:27:04Z

Hi @traveraro，
After I deleted the installed yarp related files, YARp seems to be installed in a correct way, and YarpManager can be started normally. However, after I connected iCub to the network cable, YARp seemed not to start normally. I have the impression that I should modify the configuration file, please tell me where I should modify it.

Setting up yarp and iCub env vars
icub@isaacliang-LC3:~$ yarpserver 

     ==========================
    | __  __ ___  ____   ____  |
    | \ \/ //   ||  _ \ |  _ \ |
    |  \  // /| || |/ / | |/ / |
    |  / // ___ ||  _ \ |  _/  |
    | /_//_/  |_||_| \_\|_|    |
    |                          |
     ==========================

Call with --help for information on available options
Using port database: :memory:
Using subscription database: :memory:
IP address: default
Port number: 10000
[WARNING] |yarp.os.MultiNamespace| Could not find namespace the_robot_network_namespace
[ERROR] |yarp.os.Port|/| Port / failed to activate at tcp://10.43.239.142:10000/ (address conflict)
[ERROR] Name server failed to open
icub@isaacliang-LC3:~$ yarpmanager
[ERROR] |yarp.os.Property| cannot read from ymanager.ini
[WARNING] |yarp.os.MultiNamespace| Could not find namespace the_robot_network_namespace
icub@isaacliang-LC3:~$

traversaro · 2022-06-30T07:32:35Z

Hi @SSSSamZhu, can you open a separate issue in https://github.com/robotology/community for this problem? I think that we debugged enough problems in this issue, and for clarity it is good to have an issue for each problem, thanks!

SSSSamZhu · 2022-06-30T07:35:36Z

Hi @SSSSamZhu, can you open a separate issue in https://github.com/robotology/community for this problem? I think that we debugged enough problems in this issue, and for clarity it is good to have an issue for each problem, thanks!

ok, I will close this issue. Thanks!

traversaro mentioned this issue Jun 19, 2022

Running iCub2/3 Gazebo Classic simulation is failing when superbuild is compiled from source using dependencies provided by conda-forge #1175

Open

SSSSamZhu closed this as completed Jun 23, 2022

SSSSamZhu reopened this Jun 24, 2022

SSSSamZhu closed this as completed Jun 30, 2022

Undefinded problems encountered during the build process #1168

Undefinded problems encountered during the build process #1168

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traversaro commented Jun 22, 2022

spdlog problem

fatal: unsafe repository error (is owned by someone else)

traversaro commented Jun 22, 2022

fatal: unsafe repository error (is owned by someone else)

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