R-check.yml

on: [push, pull_request]

name: R-check

jobs:
  R-check:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
        - { os: windows-latest, r: 'latest'}
        - { os: macOS-latest, r: 'latest'}
        - { os: macOS-latest, r: 'devel'}
        - { os: ubuntu-16.04, r: '3.6', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
        - { os: ubuntu-16.04, r: 'latest', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}

    env:
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      RSPM: ${{ matrix.config.rspm }}

    steps:
      - uses: actions/checkout@v2

      - uses: r-lib/actions/setup-r@v1
        with:
          r-version: ${{ matrix.config.r }}

      - uses: r-lib/actions/setup-pandoc@v1

      - name: Cache R packages
        if: runner.os != 'Windows'
        uses: actions/cache@v2
        with:
          path: ${{ env.R_LIBS_USER }}
          key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{ hashFiles('DESCRIPTION') }}

      - name: install macOS system dependencies
        if: runner.os == 'macOS'
        continue-on-error: true
        run: |
          brew install pkg-config gdal geos openssl udunits protobuf proj
      
      - name: Install system dependencies
        if: runner.os == 'Linux'
        env:
          RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
        run: |
          Rscript -e "install.packages('remotes')" -e "remotes::install_github('r-hub/sysreqs')"
          sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
          sudo -s eval "$sysreqs"
          sudo add-apt-repository -y ppa:ubuntugis/ppa
          sudo apt update
          sudo apt install \
            libudunits2-dev \
            libv8-dev \
            libproj-dev \
            libgeos-dev \
            libgdal-dev \
            valgrind \
            libpq-dev \
            netcdf-bin
      
      - name: Install dependencies
        run: Rscript -e "install.packages('remotes')" -e "remotes::install_deps(dependencies = TRUE)" -e "remotes::install_cran(c('rcmdcheck', 'geoaxe', 'rgbif', 'rworldmap', 'maps', 'covr', 'raster', 'sf', 's2'))"

      - name: Check
        run: Rscript -e "rcmdcheck::rcmdcheck(args = '--no-manual', error_on = 'warning', check_dir = 'check')"

      - name: Upload check results
        if: failure()
        uses: actions/upload-artifact@v2
        with:
          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
          path: check

      - name: Test coverage
        if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'latest'
        run: |
          Rscript -e 'install.packages("covr")' -e 'covr::codecov(token = "${{secrets.CODECOV_TOKEN}}")'