Newest versions at top.
- None
- Deprecate 'upgrade_babette', as this is against CRAN guidelines
- All functions have their return value documented
- Documentation links to other packages' documentation
- Removed unused dependencies, and testthat dependency outside tests.
- Import rlang for checking conditions.
- None
- None
- Use new CITATION style
- None
- None
- None
- Did
usethis::use_package_doc()
- None
- None
- None
- Fix newer CRAN warnings
- None
- None
- Use GitHub Actions as a continuous integration service
- Add URL to DESCRIPTION
- None
- None
- None
- Do not run example code of internal function 'prepare_file_creation'
on CRAN flavor
r-oldrel-macos-x86_64
- Can run BEAST2 and BEAST2 packages when these are installed at a custom location
- None
- CRAN version
- None
- None
- None
- None
- No testthat usage in documentation examples
- None
- None
- None
- Use https of BEAST2 website
- Building the package does not create temporary files in
~/.cache, fix #85
- None
- None
- None
- Process feedback CRAN (Issue 81)
- Renamed internal function names to be more descriptive
- None
- Remove arguments that are deprecated, as there is no CRAN version yet
- Follow the
beastierv2.3 new interface, in which the log filenames are part of the MCMC (as created bycreate_mcmc)
- None
- None
- In
create_beast2_options,output_log_filenameandoutput_trees_filenamesare removed as arguments. These values are set by the BEAST2 XML
- babette can run when the BEAST2 options request temporary files in sub-sub-subfolders
- Builds on Travis CI's Bionic distribution
- None
- None
- None
- Fix spelling error
- None
- None
- None
- Travis CI uses
phangorns binary R package
- None
- None
- Transferred GitHub repository ownership to
ropensci - CRAN and rOpenSci release candidate
- Tagged for the academic article about babette
- None
- None
- None
- BEAST2 package management using
mauricerworks under Windows as well babetteindicates that BEAST2.exe cannot be run under Windows- Simplified interface for parameters:
# Old
distr <- create_distr_poisson(id = 1, lambda = create_lambda_param(value = 1.2))
# Added
distr <- create_distr_poisson(id = 1, lambda = 1.2)
- None
- Cannot use hyper parameters
# Deprecated: create a hyper parameter
create_lambda_param(value = 1.2, estimate = TRUE)
- None
- Tagged for the academic article about babette
- None
- None
- None
- Renamed
runtobbt_runto reduce conflicts with other packages
- None
- None
- None
- Follow all rOpenSci packaging guidelines
- None
- None