-
Notifications
You must be signed in to change notification settings - Fork 58
/
Makefile
126 lines (108 loc) · 4.88 KB
/
Makefile
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
# Determine package name and version from DESCRIPTION file
PKG_VERSION=$(shell grep -i ^version DESCRIPTION | cut -d : -d \ -f 2)
PKG_NAME=$(shell grep -i ^package DESCRIPTION | cut -d : -d \ -f 2)
# Name of built package
PKG_TAR=$(PKG_NAME)_$(PKG_VERSION).tar.gz
# Install package
install:
cd .. && R CMD INSTALL $(PKG_NAME)
# Check visibility of C entry points
check_visibility:
cd .. && R CMD INSTALL $(PKG_NAME)
nm -g src/git2r.so | grep " T " | grep 2 && exit 0 || exit 1
# Build documentation with roxygen
# 1) Remove old doc
# 2) Generate documentation
roxygen:
rm -f man/*.Rd
cd .. && Rscript -e "roxygen2::roxygenize('$(PKG_NAME)')"
# Generate PDF output from the Rd sources
# 1) Rebuild documentation with roxygen
# 2) Generate pdf, overwrites output file if it exists
pdf: roxygen
cd .. && R CMD Rd2pdf --force $(PKG_NAME)
# Build and check package
check:
cd .. && R CMD build --no-build-vignettes $(PKG_NAME)
cd .. && _R_CHECK_CRAN_INCOMING_=FALSE _R_CHECK_SYSTEM_CLOCK_=0 \
R CMD check --as-cran --no-manual --no-vignettes \
--no-build-vignettes --no-stop-on-test-error $(PKG_TAR)
# Build and check package on R-hub
rhub: clean check
cd .. && Rscript -e "rhub::check(path='$(PKG_TAR)', rhub::platforms()[['name']], show_status = FALSE)"
# Build and check package on https://win-builder.r-project.org/
.PHONY: winbuilder
winbuilder: clean check
cd .. && curl -T $(PKG_TAR) ftp://win-builder.r-project.org/R-oldrelease/
cd .. && curl -T $(PKG_TAR) ftp://win-builder.r-project.org/R-release/
cd .. && curl -T $(PKG_TAR) ftp://win-builder.r-project.org/R-devel/
# Check reverse dependencies
#
# 1) Install packages (in ../revdep/lib) to check the reverse dependencies.
# 2) Check the reverse dependencies using 'R CMD check'.
# 3) Collect results from the '00check.log' files.
revdep: revdep_install revdep_check revdep_results
# Install packages to check reverse dependencies
revdep_install: clean
mkdir -p ../revdep/lib
cd .. && R CMD INSTALL --library=revdep/lib $(PKG_NAME)
R_LIBS_USER=../revdep/lib Rscript --vanilla \
-e "options(repos = c(CRAN='https://cran.r-project.org'))" \
-e "pkg <- tools::package_dependencies('$(PKG_NAME)', which = 'all', reverse = TRUE)" \
-e "pkg <- as.character(unlist(pkg))" \
-e "dep <- sapply(pkg, tools::package_dependencies, which = 'all')" \
-e "dep <- as.character(unlist(dep))" \
-e "if ('BiocInstaller' %in% dep) {" \
-e " source('https://bioconductor.org/biocLite.R')" \
-e " biocLite('BiocInstaller')" \
-e "}" \
-e "install.packages(pkg, dependencies = TRUE)" \
-e "download.packages(pkg, destdir = '../revdep')"
# Check reverse dependencies with 'R CMD check'
revdep_check:
$(foreach var,$(wildcard ../revdep/*.tar.gz),R_LIBS_USER=../revdep/lib \
_R_CHECK_CRAN_INCOMING_=FALSE R --vanilla CMD check --as-cran \
--no-stop-on-test-error --output=../revdep $(var) \
| tee --append ../revdep/00revdep.log;)
# Collect results from checking reverse dependencies
revdep_results:
Rscript --vanilla \
-e "options(repos = c(CRAN='https://cran.r-project.org'))" \
-e "pkg <- tools::package_dependencies('$(PKG_NAME)', which = 'all', reverse = TRUE)" \
-e "pkg <- as.character(unlist(pkg))" \
-e "results <- do.call('rbind', lapply(pkg, function(x) {" \
-e " filename <- paste0('../revdep/', x, '.Rcheck/00check.log')" \
-e " if (file.exists(filename)) {" \
-e " lines <- readLines(filename)" \
-e " status <- sub('^Status: ', '', lines[grep('^Status: ', lines)])" \
-e " } else {" \
-e " status <- 'missing'" \
-e " }" \
-e " data.frame(Package = x, Status = status)" \
-e "}))" \
-e "results <- results[order(results[, 'Status']), ]" \
-e "rownames(results) <- NULL" \
-e "cat('\n\n*** Results ***\n\n')" \
-e "results" \
-e "cat('\n\n')"
# Build and check package with gctorture
check_gctorture:
cd .. && R CMD build --no-build-vignettes $(PKG_NAME)
cd .. && R CMD check --no-manual --no-vignettes --no-build-vignettes --use-gct $(PKG_TAR)
# Build and check package with valgrind
check_valgrind:
cd .. && R CMD build --no-build-vignettes $(PKG_NAME)
cd .. && R CMD check --as-cran --no-manual --no-vignettes --no-build-vignettes --use-valgrind $(PKG_TAR)
# Run all tests with valgrind
test_objects = $(wildcard tests/*.R)
valgrind:
$(foreach var,$(test_objects),R -d "valgrind --tool=memcheck --leak-check=full" --vanilla < $(var);)
configure: configure.ac
autoconf ./configure.ac > ./configure
chmod +x ./configure
clean:
./cleanup
-rm -rf ../revdep
.PHONY: all readme install roxygen sync_libgit2 Makevars check check_gctorture \
check_valgrind revdep revdep_install revdep_check revdep_results valgrind \
clean