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wir963deleted feat-Robinson2023 • 
on Nov 25, 2024

Merge pull request #17 from ruppinlab/feat-Robinson2023

Pull request merge
wir963pushed 4 commits to master • 5d6aef9…f58d92f • 
on Nov 25, 2024

Merge branch 'feat-Robinson2023' of github.com:ruppinlab/CSI-Microbes…

wir963pushed 2 commits to feat-Robinson2023 • f48c17c…ddfcfdb • 
on Nov 25, 2024

Update README.md

wir963pushed 1 commit to master • 9c145bb…5d6aef9 • 
on Jul 26, 2024

remove INVADE-seq comparison snippet

wir963pushed 1 commit to master • b0abd6c…9c145bb • 
on Jan 31, 2024

add sample denoising code

wir963pushed 1 commit to feat-Robinson2023 • e9cb55e…f48c17c • 
on Dec 28, 2023

Merge pull request #13 from ruppinlab/feat-Robinson2023

Pull request merge
wir963pushed 8 commits to master • e14fa4e…b0abd6c • 
on Dec 28, 2023

update README to include comparison

wir963pushed 1 commit to feat-Robinson2023 • 450aeaf…e9cb55e • 
on Dec 28, 2023

include rules for running CSI-Microbes, INVADE-seq and SAHMI

wir963pushed 1 commit to feat-Robinson2023 • bc88785…450aeaf • 
on Dec 27, 2023

clean up SAHMI and INVADEseq

wir963pushed 1 commit to feat-Robinson2023 • f0e646f…bc88785 • 
on Nov 27, 2023

run SAHMI and INVADEseq on Robinson2023-10x

wir963pushed 1 commit to feat-Robinson2023 • 2180479…f0e646f • 
on Nov 20, 2023

new cluster fixes

wir963pushed 1 commit to feat-Robinson2023 • 9db2c76…2180479 • 
on Oct 13, 2023

bug fixes

wir963pushed 1 commit to feat-Robinson2023 • 14422de…9db2c76 • 
on Oct 13, 2023

initial commit to run Robinson with SRA data

wir963pushed 2 commits to feat-Robinson2023 • 25b3abd…14422de • 
on Oct 12, 2023

add script for running on SGE

wir963pushed 1 commit to feat-SAHMI • 45ed9cd…df90441 • 
on Jun 21, 2023

pull data from SRA

wir963pushed 1 commit to feat-SAHMI • 989443c…45ed9cd • 
on Jun 21, 2023

fix download FQ and use prefetch

wir963pushed 1 commit to feat-SAHMI • 3b81077…989443c • 
on Jun 21, 2023

add rule for downloading from SRA

wir963created feat-SAHMI • 3b81077 • 
on Jun 21, 2023

Merge pull request #12 from ruppinlab/feat-Robinson2023

Pull request merge
wir963pushed 3 commits to master • d954f54…e14fa4e • 
on May 2, 2023

Merge pull request #11 from ruppinlab/master

Pull request merge
wir963pushed 2 commits to feat-Robinson2023 • 6440c32…25b3abd • 
on Apr 27, 2023

update year for Robinson2023 and update README

wir963pushed 1 commit to feat-Robinson2023 • da289d2…6440c32 • 
on Apr 27, 2023

Merge pull request #10 from ruppinlab/feat-Robinson2023

Pull request merge
wir963pushed 55 commits to master • a656444…d954f54 • 
on Apr 27, 2023

add code for processing Robinson2023, Pelka2021 and Zhang2021

wir963created feat-Robinson2023 • da289d2 • 
on Apr 27, 2023