Activity
Deleted branch
Merge branch 'feat-Robinson2023' of github.com:ruppinlab/CSI-Microbes…
Merge branch 'feat-Robinson2023' of github.com:ruppinlab/CSI-Microbes…
add sample denoising code
add sample denoising code
update README to include comparison
update README to include comparison
include rules for running CSI-Microbes, INVADE-seq and SAHMI
include rules for running CSI-Microbes, INVADE-seq and SAHMI
clean up SAHMI and INVADEseq
clean up SAHMI and INVADEseq
run SAHMI and INVADEseq on Robinson2023-10x
run SAHMI and INVADEseq on Robinson2023-10x
new cluster fixes
new cluster fixes
bug fixes
bug fixes
initial commit to run Robinson with SRA data
initial commit to run Robinson with SRA data
add script for running on SGE
add script for running on SGE
pull data from SRA
pull data from SRA
fix download FQ and use prefetch
fix download FQ and use prefetch
add rule for downloading from SRA
add rule for downloading from SRA
Merge pull request #11 from ruppinlab/master
Merge pull request #11 from ruppinlab/master
Pull request merge
update year for Robinson2023 and update README
update year for Robinson2023 and update README
add code for processing Robinson2023, Pelka2021 and Zhang2021
add code for processing Robinson2023, Pelka2021 and Zhang2021