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Compiler issue on AArch64 Linux #425

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jakobnissen opened this issue Mar 19, 2024 · 1 comment
Open

Compiler issue on AArch64 Linux #425

jakobnissen opened this issue Mar 19, 2024 · 1 comment

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@jakobnissen
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jakobnissen commented Mar 19, 2024

This error occurs only on Linux and ARMv8. It works fine on M1 MacOS. Error:

[08:00:56]    Compiling rust-htslib v0.44.1
[08:00:57] error[E0308]: mismatched types
[08:00:57]     --> /opt/x86_64-linux-musl/registry/src/index.crates.io-6f17d22bba15001f/rust-htslib-0.44.1/src/bam/record.rs:2324:17
[08:00:57]      |
[08:00:57] 2319 |             let ret = hts_sys::bam_mods_query_type(
[08:00:57]      |                       ---------------------------- arguments to this function are incorrect
[08:00:57] ...
[08:00:57] 2324 |                 &mut canonical,
[08:00:57]      |                 ^^^^^^^^^^^^^^ expected `*mut u8`, found `&mut i8`
[08:00:57]      |
[08:00:57]      = note:    expected raw pointer `*mut u8`
[08:00:57]              found mutable reference `&mut i8`
[08:00:57] note: function defined here
[08:00:57]     --> /workspace/srcdir/CoverM/target/aarch64-unknown-linux-musl/release/build/hts-sys-9926615689a35892/out/bindings.rs:9439:12
[08:00:57]      |
[08:00:57] 9439 |     pub fn bam_mods_query_type(
[08:00:57]      |            ^^^^^^^^^^^^^^^^^^^
[08:00:57] 
[08:00:57] For more information about this error, try `rustc --explain E0308`.

This appears to be the same issue as #352 - however, notice that the error occurs on rust-htslib 0.44.1, where the error ought to be fixed. Maybe the fix didn't get in properly?

@jakobnissen jakobnissen changed the title Compiler issue on ARMv8 Compiler issue on AArch64 Linux Mar 19, 2024
@ghuls
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ghuls commented Mar 20, 2024

@jakobnissen I think it was recently fixed in master: #415

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