.travis.yml

# Neuroconductor Template no ANTs
language: r
sudo: false
cache: packages
warnings_are_errors: true
use_bioc: true
bioc_required: true
cran: http://cran.rstudio.com

os:
  - linux
  - osx

env:
  global:
  - R_BUILD_ARGS="--no-build-vignettes --no-manual"
  - R_CHECK_ARGS="--as-cran --install-args=--build"
  - RGL_USE_NULL=TRUE

# r_check_args: "--as-cran --install-args=--build"

before_install:
  - export RGL_USE_NULL=TRUE
  - export PROJ_DIR=`basename $PWD`
  - fname=travis_helpers.sh
  - wget -O ${fname} http://bit.ly/travis_helpers
  - cat ${fname}; source ${fname}; rm ${fname}
  - cat DESCRIPTION
  - export PACKAGE_NAME=`package_name`
  - remove_neuroc_packages
  - export ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=1
  # does all the clang exports
  - x=`export_clang_cxx`; eval ${x}
  - echo "CC=${CC}, CXX=${CXX}, CXX1X=${CXX1X}"
  - echo "CXX1XSTD=${CXX1XSTD}, CXX11=${CXX11}"
  - clang_cxx
  - export cmake_version="3.4"
  - cmake --version
  - x=`cmake_setup`; echo "${x}"; eval ${x};
  - cmake --version
  - export ants_user=muschellij2
  - echo "Installing Missing Deps ITKR"
  - install_missing_remote_deps ${ants_user}/ITKR
  - gh_binary_install ${ants_user}/ITKR ;
  - if [[ "${PACKAGE_NAME}" != "ITKR" ]];
    then
      echo "Installing Missing Deps ANTsRCore" ;
      install_missing_remote_deps ${ants_user}/ANTsRCore;
      gh_binary_install ${ants_user}/ANTsRCore ;
    fi
  - if [[ "${PACKAGE_NAME}" != "ANTsRCore" && "${PACKAGE_NAME}" != "ITKR" ]];
    then
      echo "Installing Missing Deps ANTsR" ;
      install_missing_remote_deps ${ants_user}/ANTsR ;
      gh_binary_install ${ants_user}/ANTsR ;
    fi
  - cat DESCRIPTION
  - install_remotes_no_dep
  - cat DESCRIPTION
  - echo $PATH ;

after_success:
  - cat ${PACKAGE_NAME}.Rcheck/00install.out
  - cat ${PACKAGE_NAME}.Rcheck/00check.log

after_failure:
  - cat ${PACKAGE_NAME}.Rcheck/00install.out
  - cat ${PACKAGE_NAME}.Rcheck/00check.log

# need this explicitly
# for naming convention
before_deploy:
  - R CMD INSTALL --build ${PKG_TARBALL}
  # so no overwrite of linux build
  - if [ "$TRAVIS_OS_NAME" = "osx" ];
    then
      rm -f *.tar.gz ;
    fi

deploy:
  provider: releases
  skip_cleanup: true
  api_key:
    secure: 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
  file_glob: true
  file: ${PACKAGE_NAME}*.t*gz
  on:
    tags: true
    repo: muschellij2/${PROJ_DIR}

after_deploy:
  - Rscript -e 'covr::coveralls(type = "all")'