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new species without reference genome #1

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yangxiaofeill opened this issue May 8, 2020 · 0 comments
Open

new species without reference genome #1

yangxiaofeill opened this issue May 8, 2020 · 0 comments

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@yangxiaofeill
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Hi author,
I tried to use hic_hiker to refine the 3d-DNA results of our plant genome. However, the required files include the .sam file by bwa mem $ref $3d_DNA.final.fasta. Our sequenced genome is a new species, that is to say, we haven't a reference genome.
How to solve this problem?

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