NAMESPACE

# Generated by roxygen2: do not edit by hand

export(compress_transporters)
export(condense_metabolite_set)
export(forestMaker)
export(generate_sifAtt)
export(get_pure_kegg_ids)
export(limma_res_to_ttop_list)
export(map_pathways_to_metabolites)
export(metactivity)
export(model_to_pathway_sif)
export(nicePCA)
export(nitrogen_tracking)
export(pathway_HM)
export(plotMetaboliteContribution)
export(plot_reaction_network)
export(plot_significant_pathways)
export(prepare_metabolite_set)
export(prepare_regulon_df)
export(rearrange_dataframe)
export(remove_cofactors)
export(runLimma)
export(split_transaminases)
export(t_table_metactivity_input_formater)
export(translate_complexes)
export(translate_results)
export(ttopFormatter)
export(ttop_list_to_log2FC_table)
export(ttop_list_to_t_table)
import(dplyr)
import(ggplot2)
import(ggrepel)
import(grid)
import(limma)
import(magrittr)
import(sjmisc)
importFrom(RColorBrewer,brewer.pal)
importFrom(cowplot,get_legend)
importFrom(gridExtra,arrangeGrob)
importFrom(igraph,V)
importFrom(igraph,delete_vertices)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,neighbors)
importFrom(parallel,detectCores)
importFrom(parallel,mclapply)
importFrom(reshape2,dcast)
importFrom(reshape2,melt)
importFrom(scales,rescale)
importFrom(stringr,str_extract)
importFrom(visNetwork,visNetwork)
importFrom(visNetwork,visOptions)