Update OpenBLAS to 0.3.9 - fixes build error of iml on fedora-32-standard

[mkoeppe]

0.3.9 was released in Feb 2020. https://github.com/xianyi/OpenBLAS/releases

The upgrade fixes the build error of iml on fedora-32-standard, caused by our openblas installation of 0.3.6 being underlinked (details - see #29393).

The upstream tarball URL is in checksums.ini. To test the update on this branch: Use make SAGE_SPKG="sage-spkg -o" openblas; this will download the new upstream package automatically.

Related tickets:

• Previous update: openblas 0.3.6 #27847 openblas 0.3.6
• Fix BLAS-related installation errors on various systems #29088 Fix BLAS-related installation errors on various systems
• OpenBLAS build failure with MAKEFLAGS='-j4 -l4' #28768 another openblas build failure
• openblas sometimes fails its testsuite on OS X #28731 openblas sometimes fails its testsuite on OS X
• Linking OpenBLAS wrong on OSX #28008 Linking OpenBLAS wrong on OSX
• Improve SAGE_FAT_BINARY for openblas #22179 Improve SAGE_FAT_BINARY for openblas
• Fix R installation errors related to gfortran #29170 Fix R installation errors related to gfortran
• CBC tries to use system's blas at runtime which creates an error #22006 CBC tries to use system's blas at runtime which creates an error
• openblas from Cygwin's package deadloops after fork #22822 openblas from Cygwin's package deadloops after fork
• sage with 64 bit openblas #26000 sage with 64 bit openblas

CC: @dimpase @vbraun @jpflori @sagetrac-tmonteil @embray @timokau @jhpalmieri @zimmermann6 @mwageringel @orlitzky @kiwifb

Component: packages: standard

Author: Matthias Koeppe

Branch/Commit: 1238ca7

Reviewer: Dima Pasechnik

Issue created by migration from https://trac.sagemath.org/ticket/29378

[mkoeppe]

Branch: u/mkoeppe/upgrade_openblas_0.3.9

[mkoeppe]

Commit: 1238ca7

[mkoeppe]

New commits:

1238ca7

Update openblas to 0.3.9, add upstream_url

[mkoeppe]

Author: Matthias Koeppe

[mkoeppe]

comment:3

Tests run at https://github.com/mkoeppe/sage/actions/runs/59868244

[mkoeppe]

comment:4

The update by itself does not fix the errors of the type reported in #29170.

On archlinux-latest-minimal (https://github.com/mkoeppe/sage/runs/522730107):

cc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c integrate.c -o integrate.o
In file included from ../../src/include/R_ext/Applic.h:41,
                 from integrate.c:33:
../../src/include/R_ext/BLAS.h:103:55: error: expected declaration specifiers or '...' before ')' token
  103 |   const double *beta, double *y, const int *incy FCLEN);
      |                                                       ^

[mkoeppe]

comment:6

Tests ran at https://github.com/mkoeppe/sage/actions/runs/64126739

Fixes fedora-32-standard openblas build, and no problems on other platforms with this update. Needs review

[dimpase]

Reviewer: Dima Pasechnik

[dimpase]

comment:7

lgtm (we still don't know from GH Actions whether tests pass on MacOS, but I suppose it is now for the bots)

[mkoeppe]

comment:8

Thanks!

I did the macOS test on my machine. The test didn't go through on GitHub because of #29418

[vbraun]

Changed branch from u/mkoeppe/upgrade_openblas_0.3.9 to 1238ca7