Packages dsdp, scip_sdp #34749

[scip_sdp-4.1.0] -- Build shared libraries: ON
[scip_sdp-4.1.0] -- Found lapack library: /Library/Developer/CommandLineTools/SDKs/MacOSX12.3.sdk/usr/lib/liblapack.tbd
[scip_sdp-4.1.0] -- Found blas library: /Library/Developer/CommandLineTools/SDKs/MacOSX12.3.sdk/usr/lib/libblas.tbd

needs to be changed so it uses our openblas

[scip_sdp-4.1.0] -- Finding symmetry computation program "bliss"
[scip_sdp-4.1.0] -- Finding BLISS
[scip_sdp-4.1.0] -- Finding BLISS - found
...
[scip_sdp-4.1.0] /Users/mkoeppe/s/sage/sage-rebasing/local/var/tmp/sage/build/scip_sdp-4.1.0/src/src/symmetry/compute_symmetry_bliss.cpp:42:10: fatal error: 'bliss/defs.hh' file not found
[scip_sdp-4.1.0] #include <bliss/defs.hh>
[scip_sdp-4.1.0]          ^~~~~~~~~~~~~~~

needs to be find scip's vendored bliss (or we need to unvendor - #33010/#34747)

Last 10 new commits:

`68fb9a7`	`build/pkgs/scipoptsuite/dependencies: Add papilo`
`2dd029e`	`build/pkgs/{scipoptsuite,soplex}: Use papilo`
`5efb7ba`	`build/pkgs/soplex/dependencies: Add papilo`
`0fc60a0`	`build/pkgs/scipoptsuite: Fix install_name on macOS`
`392455d`	`build/pkgs/scip: Rename from scipoptsuite`
`45f957e`	`Revert "build/pkgs/boost_cropped/distros/debian.txt: Add libboost-program-options-dev"`
`931e348`	`Merge #34726`
`9b40272`	`build/pkgs/scip/distros/conda.txt: New`
`6221180`	`Merge #31329`
`8a954ab`	`build/pkgs/scip_sdp: New`

mkoeppe · 2022-12-06T22:27:28Z

comment:6

The failure with bliss was due to a broken local installation

mkoeppe · 2022-12-06T23:01:48Z

comment:7

scip_sdp should probably use https://cmake.org/cmake/help/latest/module/FindLAPACK.html, https://cmake.org/cmake/help/latest/module/FindBLAS.html

sagetrac-git · 2022-12-06T23:02:29Z

Changed commit from 8a954ab to 8250adb

sagetrac-git · 2022-12-06T23:02:29Z

Branch pushed to git repo; I updated commit sha1. New commits:

`8250adb`	`build/pkgs/scip_sdp/spkg-install.in: Better config`

mkoeppe · 2022-12-06T23:04:10Z

comment:9

Many linker errors on macOS:

[scip_sdp-4.1.0] [100%] Linking CXX shared library ../lib/libscipsdp.dylib
[scip_sdp-4.1.0] cd /Users/mkoeppe/s/sage/sage-rebasing/local/var/tmp/sage/build/scip_sdp-4.1.0/src/build/src && /usr/local/Cellar/cmake/3.24.2/bin/cmake -E cmake_link_script CMakeFiles/libscipsdp.dir/link.txt --verbose=1
[scip_sdp-4.1.0] /Library/Developer/CommandLineTools/usr/bin/g++  -std=gnu++11 -g -O2 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.3.sdk -dynamiclib -Wl,-headerpad_max_install_names -L/Users/mkoeppe/s/sage/sage-rebasing/local/lib -Wl,-rpath,/Users/mkoeppe/s/sage/sage-rebasing/local/lib -L/Users/mkoeppe/s/sage/sage-rebasing/local/lib -Wl,-rpath,/Users/mkoeppe/s/sage/sage-rebasing/local/lib -compatibility_version 4.1.0 -current_version 4.1.0 -o ../lib/libscipsdp.4.1.0.dylib -install_name libscipsdp.4.1.dylib CMakeFiles/libscipsdp.dir/scipsdp/SdpVarmapper.c.o CMakeFiles/libscipsdp.dir/scipsdp/SdpVarfixer.c.o CMakeFiles/libscipsdp.dir/scipsdp/cons_sdp.c.o CMakeFiles/libscipsdp.dir/scipsdp/cons_savedsdpsettings.c.o CMakeFiles/libscipsdp.dir/scipsdp/cons_savesdpsol.c.o CMakeFiles/libscipsdp.dir/scipsdp/relax_sdp.c.o CMakeFiles/libscipsdp.dir/scipsdp/disp_sdpiterations.c.o CMakeFiles/libscipsdp.dir/scipsdp/disp_sdpavgiterations.c.o CMakeFiles/libscipsdp.dir/scipsdp/disp_sdpfastsettings.c.o CMakeFiles/libscipsdp.dir/scipsdp/disp_sdppenalty.c.o CMakeFiles/libscipsdp.dir/scipsdp/disp_sdpunsolved.c.o CMakeFiles/libscipsdp.dir/scipsdp/prop_sdpredcost.c.o CMakeFiles/libscipsdp.dir/scipsdp/branch_sdpmostfrac.c.o CMakeFiles/libscipsdp.dir/scipsdp/branch_sdpmostinf.c.o CMakeFiles/libscipsdp.dir/scipsdp/branch_sdpobjective.c.o CMakeFiles/libscipsdp.dir/scipsdp/branch_sdpinfobjective.c.o CMakeFiles/libscipsdp.dir/scipsdp/heur_sdpfracround.c.o CMakeFiles/libscipsdp.dir/scipsdp/heur_sdpinnerlp.c.o CMakeFiles/libscipsdp.dir/scipsdp/heur_sdpfracdiving.c.o CMakeFiles/libscipsdp.dir/scipsdp/heur_sdprand.c.o CMakeFiles/libscipsdp.dir/scipsdp/prop_sdpsymmetry.c.o CMakeFiles/libscipsdp.dir/scipsdp/prop_sdpobbt.c.o CMakeFiles/libscipsdp.dir/scipsdp/prop_companalcent.c.o CMakeFiles/libscipsdp.dir/scipsdp/reader_cbf.c.o CMakeFiles/libscipsdp.dir/scipsdp/reader_sdpa.c.o CMakeFiles/libscipsdp.dir/scipsdp/sdpsymmetry.c.o CMakeFiles/libscipsdp.dir/scipsdp/table_relaxsdp.c.o CMakeFiles/libscipsdp.dir/scipsdp/table_slater.c.o CMakeFiles/libscipsdp.dir/scipsdp/scipsdpdefplugins.c.o CMakeFiles/libscipsdp.dir/sdpi/sdpi.c.o CMakeFiles/libscipsdp.dir/sdpi/sdpsolchecker.c.o CMakeFiles/libscipsdp.dir/sdpi/solveonevarsdp.c.o CMakeFiles/libscipsdp.dir/sdpi/lapack_interface.c.o CMakeFiles/libscipsdp.dir/sdpi/sdpiclock.c.o CMakeFiles/libscipsdp.dir/scipsdpgithash.c.o CMakeFiles/libscipsdp.dir/sdpi/sdpisolver_none.c.o CMakeFiles/libscipsdp.dir/symmetry/compute_symmetry_bliss.cpp.o  /Users/mkoeppe/s/sage/sage-rebasing/local/lib/libbliss.a /Library/Developer/CommandLineTools/SDKs/MacOSX12.3.sdk/usr/lib/liblapack.tbd /Library/Developer/CommandLineTools/SDKs/MacOSX12.3.sdk/usr/lib/libblas.tbd -lm 
...
scip_sdp-4.1.0]   "_SCIPverbMessage", referenced from:
[scip_sdp-4.1.0]       _consLockSdp in cons_sdp.c.o
[scip_sdp-4.1.0]       _consExitSdp in cons_sdp.c.o
[scip_sdp-4.1.0]       _consPresolSdp in cons_sdp.c.o
[scip_sdp-4.1.0]       _relaxInitSolSdp in relax_sdp.c.o
[scip_sdp-4.1.0]       _relaxExitSolSdp in relax_sdp.c.o
[scip_sdp-4.1.0]       _SCIPparamChgdSolvesdps in relax_sdp.c.o
[scip_sdp-4.1.0]       _SCIPrelaxSdpComputeAnalyticCenters in relax_sdp.c.o
[scip_sdp-4.1.0]       ...
[scip_sdp-4.1.0]   "_SCIPwarningMessage", referenced from:
[scip_sdp-4.1.0]       _calcRelax in relax_sdp.c.o
[scip_sdp-4.1.0]       _determineSymmetry in prop_sdpsymmetry.c.o
[scip_sdp-4.1.0]       _readerReadSdpa in reader_sdpa.c.o
[scip_sdp-4.1.0] ld: symbol(s) not found for architecture x86_64
[scip_sdp-4.1.0] clang: error: linker command failed with exit code 1 (use -v to see invocation)
[scip_sdp-4.1.0] make[5]: *** [lib/libscipsdp.4.1.0.dylib] Error 1

Looks like it forgets to link the scip library

mkoeppe · 2022-12-06T23:49:16Z

comment:10

Opened scipopt/SCIP-SDP#1

sagetrac-git · 2022-12-07T23:06:51Z

Branch pushed to git repo; I updated commit sha1. New commits:

`0a5647a`	`build/pkgs/scip_sdp/patches: Add macOS build patches`

sagetrac-git · 2022-12-07T23:06:51Z

Changed commit from 8250adb to 0a5647a

sagetrac-git · 2022-12-09T03:18:44Z

Changed commit from 0a5647a to f90180c

sagetrac-git · 2022-12-09T03:18:44Z

Branch pushed to git repo; I updated commit sha1. New commits:

`f90180c`	`build/pkgs/dsdp: New dummy package`

mkoeppe · 2022-12-09T05:07:31Z

comment:13

https://github.com/cvxopt/cvxopt-wheels/blob/master/library_builders.sh has an install script for dsdp

dimpase · 2022-12-09T09:21:54Z

comment:14

DSDP should be a separate Sage package, I think.

mkoeppe · 2022-12-09T17:45:05Z

comment:15

Yes, but this ancient package has no proper build system. Various ad hoc installation scripts in downstream packages:

https://github.com/macports/macports-ports/tree/master/math/DSDP
https://salsa.debian.org/debian/dsdp/-/blob/debian/master/debian/rules
https://src.fedoraproject.org/rpms/DSDP/blob/rawhide/f/DSDP.Makefile ("Forget it! I'm writing my own Makefile")
https://gitweb.gentoo.org/repo/gentoo.git/tree/sci-libs/dsdp

sagetrac-git · 2022-12-09T18:12:30Z

Changed commit from f90180c to f7e21a0

sagetrac-git · 2022-12-09T18:12:30Z

Branch pushed to git repo; I updated commit sha1. New commits:

`98155a5`	`build/pkgs/dsdp: Add installation script`
`4d02672`	`build/pkgs/dsdp/distros/conda.txt: New`
`f7e21a0`	`build/pkgs/scip_sdp: Use upstream patch https://github.com/scipopt/SCIP-SDP/commit/09e79cf75146ca34c637f919d1f4527a63743300, configure blas/lapack`

sagetrac-git · 2022-12-09T18:14:46Z

Changed commit from f7e21a0 to a90f917

sagetrac-git · 2022-12-09T18:14:46Z

Branch pushed to git repo; I updated commit sha1. New commits:

`a90f917`	`build/pkgs/dsdp/patches/debian-type-mismatch.patch: New`

sagetrac-git · 2022-12-09T18:20:13Z

Branch pushed to git repo; I updated commit sha1. New commits:

`24dae35`	`build/pkgs/dsdp/distros/repology.txt: New`

mkoeppe · 2022-12-09T23:34:26Z

comment:36

debian-bullseye-minimal (https://github.com/mkoeppe/SCIP-SDP/actions/runs/3660649526/jobs/6189250984)

  [scip_sdp-git]   /usr/bin/g++  -std=gnu++11 -g -O2 -Wl,-rpath-link,/sage/local/lib -L/sage/local/lib -Wl,-rpath,/sage/local/lib -Wl,-rpath-link,/sage/local/lib -L/sage/local/lib -Wl,-rpath,/sage/local/lib -rdynamic CMakeFiles/scipsdp.dir/scipsdp/main.c.o CMakeFiles/scipsdp.dir/scipsdp/SdpVarmapper.c.o CMakeFiles/scipsdp.dir/scipsdp/SdpVarfixer.c.o CMakeFiles/scipsdp.dir/scipsdp/cons_sdp.c.o CMakeFiles/scipsdp.dir/scipsdp/cons_savedsdpsettings.c.o CMakeFiles/scipsdp.dir/scipsdp/cons_savesdpsol.c.o CMakeFiles/scipsdp.dir/scipsdp/relax_sdp.c.o CMakeFiles/scipsdp.dir/scipsdp/disp_sdpiterations.c.o CMakeFiles/scipsdp.dir/scipsdp/disp_sdpavgiterations.c.o CMakeFiles/scipsdp.dir/scipsdp/disp_sdpfastsettings.c.o CMakeFiles/scipsdp.dir/scipsdp/disp_sdppenalty.c.o CMakeFiles/scipsdp.dir/scipsdp/disp_sdpunsolved.c.o CMakeFiles/scipsdp.dir/scipsdp/prop_sdpredcost.c.o CMakeFiles/scipsdp.dir/scipsdp/branch_sdpmostfrac.c.o CMakeFiles/scipsdp.dir/scipsdp/branch_sdpmostinf.c.o CMakeFiles/scipsdp.dir/scipsdp/branch_sdpobjective.c.o CMakeFiles/scipsdp.dir/scipsdp/branch_sdpinfobjective.c.o CMakeFiles/scipsdp.dir/scipsdp/heur_sdpfracround.c.o CMakeFiles/scipsdp.dir/scipsdp/heur_sdpinnerlp.c.o CMakeFiles/scipsdp.dir/scipsdp/heur_sdpfracdiving.c.o CMakeFiles/scipsdp.dir/scipsdp/heur_sdprand.c.o CMakeFiles/scipsdp.dir/scipsdp/prop_sdpsymmetry.c.o CMakeFiles/scipsdp.dir/scipsdp/prop_sdpobbt.c.o CMakeFiles/scipsdp.dir/scipsdp/prop_companalcent.c.o CMakeFiles/scipsdp.dir/scipsdp/reader_cbf.c.o CMakeFiles/scipsdp.dir/scipsdp/reader_sdpa.c.o CMakeFiles/scipsdp.dir/scipsdp/sdpsymmetry.c.o CMakeFiles/scipsdp.dir/scipsdp/table_relaxsdp.c.o CMakeFiles/scipsdp.dir/scipsdp/table_slater.c.o CMakeFiles/scipsdp.dir/scipsdp/scipsdpdefplugins.c.o CMakeFiles/scipsdp.dir/sdpi/sdpi.c.o CMakeFiles/scipsdp.dir/sdpi/sdpsolchecker.c.o CMakeFiles/scipsdp.dir/sdpi/solveonevarsdp.c.o CMakeFiles/scipsdp.dir/sdpi/lapack_interface.c.o CMakeFiles/scipsdp.dir/sdpi/sdpiclock.c.o CMakeFiles/scipsdp.dir/scipsdpgithash.c.o CMakeFiles/scipsdp.dir/sdpi/sdpisolver_dsdp.c.o CMakeFiles/scipsdp.dir/symmetry/compute_symmetry_bliss.cpp.o -o ../bin/scipsdp  -ldsdp -llapack -lblas /sage/local/lib/libscip.so.8.0.2.0 -Wl,-Bstatic -lbliss -Wl,-Bdynamic -L/sage/local/lib -lopenblas -lm 
  [scip_sdp-git]   /usr/bin/ld: cannot find -llapack
  [scip_sdp-git]   /usr/bin/ld: cannot find -lblas

sagetrac-git · 2022-12-09T23:54:53Z

Branch pushed to git repo; I updated commit sha1. New commits:

`8ef2ea4`	`build/pkgs/scip_sdp/patches/another_blas_change.patch: New`

sagetrac-git · 2022-12-09T23:54:53Z

Changed commit from a10dd81 to 8ef2ea4

mkoeppe · 2022-12-10T01:05:36Z

comment:39

scipopt/SCIP-SDP#5

mkoeppe · 2022-12-10T02:52:09Z

comment:40

archlinux-latest-standard (https://github.com/mkoeppe/SCIP-SDP/actions/runs/3660649526/jobs/6190005686)

  [scip_sdp-git]   /usr/sbin/g++  -std=gnu++11 -g -O2 -Wl,-rpath-link,/sage/local/lib -L/sage/local/lib -Wl,-rpath,/sage/local/lib -Wl,-rpath-link,/sage/local/lib -L/sage/local/lib -Wl,-rpath,/sage/local/lib -rdynamic CMakeFiles/scipsdp.dir/scipsdp/main.c.o CMakeFiles/scipsdp.dir/scipsdp/SdpVarmapper.c.o CMakeFiles/scipsdp.dir/scipsdp/SdpVarfixer.c.o CMakeFiles/scipsdp.dir/scipsdp/cons_sdp.c.o CMakeFiles/scipsdp.dir/scipsdp/cons_savedsdpsettings.c.o CMakeFiles/scipsdp.dir/scipsdp/cons_savesdpsol.c.o CMakeFiles/scipsdp.dir/scipsdp/relax_sdp.c.o CMakeFiles/scipsdp.dir/scipsdp/disp_sdpiterations.c.o CMakeFiles/scipsdp.dir/scipsdp/disp_sdpavgiterations.c.o CMakeFiles/scipsdp.dir/scipsdp/disp_sdpfastsettings.c.o CMakeFiles/scipsdp.dir/scipsdp/disp_sdppenalty.c.o CMakeFiles/scipsdp.dir/scipsdp/disp_sdpunsolved.c.o CMakeFiles/scipsdp.dir/scipsdp/prop_sdpredcost.c.o CMakeFiles/scipsdp.dir/scipsdp/branch_sdpmostfrac.c.o CMakeFiles/scipsdp.dir/scipsdp/branch_sdpmostinf.c.o CMakeFiles/scipsdp.dir/scipsdp/branch_sdpobjective.c.o CMakeFiles/scipsdp.dir/scipsdp/branch_sdpinfobjective.c.o CMakeFiles/scipsdp.dir/scipsdp/heur_sdpfracround.c.o CMakeFiles/scipsdp.dir/scipsdp/heur_sdpinnerlp.c.o CMakeFiles/scipsdp.dir/scipsdp/heur_sdpfracdiving.c.o CMakeFiles/scipsdp.dir/scipsdp/heur_sdprand.c.o CMakeFiles/scipsdp.dir/scipsdp/prop_sdpsymmetry.c.o CMakeFiles/scipsdp.dir/scipsdp/prop_sdpobbt.c.o CMakeFiles/scipsdp.dir/scipsdp/prop_companalcent.c.o CMakeFiles/scipsdp.dir/scipsdp/reader_cbf.c.o CMakeFiles/scipsdp.dir/scipsdp/reader_sdpa.c.o CMakeFiles/scipsdp.dir/scipsdp/sdpsymmetry.c.o CMakeFiles/scipsdp.dir/scipsdp/table_relaxsdp.c.o CMakeFiles/scipsdp.dir/scipsdp/table_slater.c.o CMakeFiles/scipsdp.dir/scipsdp/scipsdpdefplugins.c.o CMakeFiles/scipsdp.dir/sdpi/sdpi.c.o CMakeFiles/scipsdp.dir/sdpi/sdpsolchecker.c.o CMakeFiles/scipsdp.dir/sdpi/solveonevarsdp.c.o CMakeFiles/scipsdp.dir/sdpi/lapack_interface.c.o CMakeFiles/scipsdp.dir/sdpi/sdpiclock.c.o CMakeFiles/scipsdp.dir/scipsdpgithash.c.o CMakeFiles/scipsdp.dir/sdpi/sdpisolver_dsdp.c.o CMakeFiles/scipsdp.dir/symmetry/compute_symmetry_bliss.cpp.o -o ../bin/scipsdp  -ldsdp /sage/local/lib/libscip.so.8.0.2.0 -Wl,-Bstatic -lbliss -Wl,-Bdynamic -llapack -lm 
  [scip_sdp-git]   cd /sage/local/var/tmp/sage/build/scip_sdp-git/src/build/src && /usr/bin/cmake -E cmake_symlink_library ../lib/libscipsdp.so.4.1.0 ../lib/libscipsdp.so.4.1 ../lib/libscipsdp.so
  [scip_sdp-git]   [100%] Built target libscipsdp
  [scip_sdp-git]   /usr/sbin/ld: CMakeFiles/scipsdp.dir/sdpi/lapack_interface.c.o: undefined reference to symbol 'dgemm_'
  [scip_sdp-git]   /usr/sbin/ld: /usr/lib/libopenblas.so.3: error adding symbols: DSO missing from command line
  [scip_sdp-git]   collect2: error: ld returned 1 exit status
  [scip_sdp-git]   make[5]: *** [src/CMakeFiles/scipsdp.dir/build.make:695: bin/scipsdp] Error 1

mkoeppe · 2022-12-10T03:01:52Z

comment:41

The failure on opensuse-tumbleweed-minimal is tracked in #34764.

The failure on centos-stream-9-pyhton3.9-minimal is #34786.

The failure on ubuntu-trusty-... comes from #34726.

The failure on conda-forge will disappear when #33842 is merged.

sagetrac-git · 2022-12-10T03:18:54Z

Changed commit from 8ef2ea4 to b9c9e3d

sagetrac-git · 2022-12-10T03:18:54Z

Branch pushed to git repo; I updated commit sha1. New commits:

`b9c9e3d`	`build/pkgs/scip_sdp/patches/zz_another_blas_change.patch: Link through with blas`

mkoeppe · 2022-12-10T04:33:26Z

comment:43

This has fixed archlinux-latest-standard (comment:40)

mkoeppe · 2022-12-10T04:38:35Z

comment:44

Ready for review

dimpase · 2022-12-11T22:55:31Z

comment:45

lgtm

dimpase · 2022-12-11T22:55:31Z

Changed reviewer from https://github.com/mkoeppe/SCIP-SDP/actions/runs/3660649526 to Dima Pasechnik

mkoeppe · 2022-12-11T23:47:34Z

comment:46

Thank you

mkoeppe · 2023-01-02T21:02:47Z

comment:47

Pdf docs don't build (#31329 comment:49)

sagetrac-git · 2023-01-02T21:11:16Z

Changed commit from b9c9e3d to 544d123

sagetrac-git · 2023-01-02T21:11:16Z

Branch pushed to git repo; I updated commit sha1. New commits:

`d954f18`	`Merge tag '9.8.beta6' into t/34749/package_scip_sdp`
`544d123`	`build/pkgs/scip_sdp/SPKG.rst: Remove bad unicode`

mkoeppe · 2023-01-02T21:53:25Z

comment:49

pdf builds now

vbraun · 2023-01-12T22:12:02Z

Changed branch from u/mkoeppe/package_scip_sdp to 544d123

mkoeppe added this to the sage-9.8 milestone Nov 15, 2022

mkoeppe added c: packages: optional labels Nov 15, 2022

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mkoeppe changed the title ~~Package scipsdp~~ Package scip_sdp Dec 6, 2022

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mkoeppe added s: needs work and removed s: needs review labels Dec 9, 2022

mkoeppe added s: needs review and removed s: needs work labels Dec 10, 2022

dimpase added s: positive review and removed s: needs review labels Dec 11, 2022

mkoeppe added s: needs work and removed s: positive review labels Jan 2, 2023

mkoeppe added s: positive review and removed s: needs work labels Jan 2, 2023

vbraun removed the s: positive review label Jan 12, 2023

vbraun closed this as completed in 3d86126 Jan 12, 2023

Packages dsdp, scip_sdp #34749

Packages dsdp, scip_sdp #34749

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