_pkgdown.yml

url: http://sahirbhatnagar.com/sail

template:
  params:
    bootswatch: cosmo
    docsearch:
      api_key: f8a14d62b00c65f3af4a90aa62a286b8
      index_name: sail

authors:
  Sahir Bhatnagar:
    href: http://sahirbhatnagar.com
  Yi Yang:
    href: http://www.math.mcgill.ca/yyang/
  Celia Greenwood:
    href: https://www.mcgill.ca/statisticalgenetics/

development:
  mode: auto

reference:
  - title: Model Fitting
    desc: >
      Main functions for fitting the sail model
    contents:
    - sail
    - cv.sail

  - title: Methods for objects of class sail and cv.sail
    desc: >
      Method functions to extract relevant information from fitted objects
    contents:
    - predict.sail
    - predict.cv.sail
    - print.sail
    - coef.sail
    - coef.cv.sail
    - plot.sail
    - plot.cv.sail


  - title: Datasets
    desc: >
      Two datasets that ship with the package to illustrate usage
    contents:
    - sailsim
    - oasis


  - title: Marginal Plots
    desc: >
      Visualize the relationship between the response and main effects or interactions
    contents:
    - plotMain
    - plotInter


  - title: Simulate Data
    desc: >
      Reproduce the simulated data from the sail paper
    contents:
    - gendata
    - gendataPaper

  - title: Internal Utility Functions
    desc: >
      Functions not really meant for the user
    contents:
    - Q_theta
    - createfolds
    - cv.lspath
    - design_sail
    - SoftThreshold
    - l2norm
    - cbbPalette
    - nonzero
    - check_col_0
    - standardize

navbar:
  type: default
  left:
    - text: Home
      href: index.html
    - text: Vignettes
      menu:
      - text: Introduction to sail
        href: articles/introduction-to-sail.html
      - text: User defined design matrix
        href: articles/user-defined-design.html
    - text: Functions and data
      href: reference/index.html
    - text: News
      href: news/index.html
  twitter:
     icon: fa-lg fa-twitter
     href: http://twitter.com/syfi_24