mvnbuild.yml

# This workflow will build a Java project with Maven, and cache/restore any dependencies to improve the workflow execution time
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-java-with-maven

# This workflow uses actions that are not certified by GitHub.
# They are provided by a third-party and are governed by
# separate terms of service, privacy policy, and support
# documentation.

name: Maven Build

on:
  push:
    branches: [ "main" ]
  pull_request:
    branches: [ "main" ]

jobs:
  build:

    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v3
    - name: Set up JDK 11
      uses: actions/setup-java@v3
      with:
        java-version: '11'
        distribution: 'temurin'
        cache: maven
    - name: Build, test and package with Maven
      run: mvn -B package --file pom.xml
    - name: Install CWL env
      run: |
        sudo apt-get -y install python3 python3-pip
        pip3 install cwlref-runner
    - name: Test CWL generation
      run: |
        git clone https://github.com/Workflomics/domain-annotations
        cd domain-annotations/WombatP_tools
        java -jar ../../target/APE-*-executable.jar ./config.json
        cd ./CWL
        cwltool --enable-dev --validate candidate_workflow_1.cwl

    # Optional: Uploads the full dependency graph to GitHub to improve the quality of Dependabot alerts this repository can receive
    - name: Update dependency graph
      uses: advanced-security/maven-dependency-submission-action@571e99aab1055c2e71a1e2309b9691de18d6b7d6