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Bowtie2 ERROR #341
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Hello,
I install ariba via conda as conda install bioconda::ariba and I've got an issue with bowtie2;
ERROR: I tried to get the version of bowtie2 with: "/Projets/PRG0015-Microbiology_Research/B2948-Microbiology_Research/Tools/02-Softs/miniconda3/envs/ariba/bin/bowtie2 --version" and the output didn't match this regular expression: ".*bowtie2.version (.)$"
Something wrong with at least one dependency. Please see the above error message(s)
ARIBA version: 2.14.6
External dependencies:
bowtie2 ERROR /Projets/PRG0015-Microbiology_Research/B2948-Microbiology_Research/Tools/02-Softs/miniconda3/envs/ariba/bin/bowtie2
cdhit 4.6 /Softs/bioinfo/cd-hit/4.6.1/cd-hit-est
nucmer 3.1 /Projets/PRG0015-Microbiology_Research/B2948-Microbiology_Research/Tools/02-Softs/miniconda3/envs/ariba/bin/nucmer
External dependencies OK: False
Python version:
3.9.15 | packaged by conda-forge | (main, Nov 22 2022, 08:45:29)
[GCC 10.4.0]
Python packages:
ariba 2.14.6 /Projets/PRG0015-Microbiology_Research/B2948-Microbiology_Research/Tools/02-Softs/miniconda3/envs/ariba/lib/python3.9/site-packages/ariba/init.py
bs4 4.12.3 /Projets/PRG0015-Microbiology_Research/B2948-Microbiology_Research/Tools/02-Softs/miniconda3/envs/ariba/lib/python3.9/site-packages/bs4/init.py
dendropy 5.0.1 /Projets/PRG0015-Microbiology_Research/B2948-Microbiology_Research/Tools/02-Softs/miniconda3/envs/ariba/lib/python3.9/site-packages/dendropy/init.py
pyfastaq 3.17.0 /Projets/PRG0015-Microbiology_Research/B2948-Microbiology_Research/Tools/02-Softs/miniconda3/envs/ariba/lib/python3.9/site-packages/pyfastaq/init.py
pymummer 0.11.0 /Projets/PRG0015-Microbiology_Research/B2948-Microbiology_Research/Tools/02-Softs/miniconda3/envs/ariba/lib/python3.9/site-packages/pymummer/init.py
pysam 0.18.0 /Projets/PRG0015-Microbiology_Research/B2948-Microbiology_Research/Tools/02-Softs/miniconda3/envs/ariba/lib/python3.9/site-packages/pysam/init.py
Python packages OK: True
Everything looks OK: False
Some dependencies not satisfied. Cannot continue.
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