Source install doesn't install python wrappers

[antunderwood]

After make install I only have

bin:
total 12
-rwxr-xr-x 1 anthony ngs_users 11227 Jul 22 10:44 gubbins

lib:
total 188
-rw-r--r-- 1 anthony ngs_users 108818 Jul 22 10:44 libgubbins.a
-rwxr-xr-x 1 anthony ngs_users    969 Jul 22 10:44 libgubbins.la
lrwxrwxrwx 1 anthony ngs_users     19 Jul 22 10:44 libgubbins.so -> libgubbins.so.0.0.1
lrwxrwxrwx 1 anthony ngs_users     19 Jul 22 10:44 libgubbins.so.0 -> libgubbins.so.0.0.1
-rwxr-xr-x 1 anthony ngs_users  77633 Jul 22 10:44 libgubbins.so.0.0.1

[andrewjpage]

Sorry theres a step missing from for installing from source:
cd python

sudo python3 setup.py install

https://github.com/sanger-pathogens/gubbins/blob/master/INSTALL.md

On 22 July 2016 at 10:46, Anthony Underwood notifications@github.com
wrote:

After make install I only have

bin:
total 12
-rwxr-xr-x 1 anthony ngs_users 11227 Jul 22 10:44 gubbins

lib:
total 188
-rw-r--r-- 1 anthony ngs_users 108818 Jul 22 10:44 libgubbins.a
-rwxr-xr-x 1 anthony ngs_users 969 Jul 22 10:44 libgubbins.la
lrwxrwxrwx 1 anthony ngs_users 19 Jul 22 10:44 libgubbins.so -> libgubbins.so.0.0.1
lrwxrwxrwx 1 anthony ngs_users 19 Jul 22 10:44 libgubbins.so.0 -> libgubbins.so.0.0.1
-rwxr-xr-x 1 anthony ngs_users 77633 Jul 22 10:44 libgubbins.so.0.0.1

—
You are receiving this because you are subscribed to this thread.
Reply to this email directly, view it on GitHub
#173, or mute the
thread
https://github.com/notifications/unsubscribe-auth/AABeVyb7nrwKrBcSvW2rw_h5vSFwAJp1ks5qYJGKgaJpZM4JSmtX
.

[antunderwood]

Thanks. What should the install path be? - I'm using non standard install location for gubbins

[andrewjpage]

You should be able to provide your own path like this:

python3 setup.py install --prefix=/path/to/install/directory

On 22 July 2016 at 11:06, Anthony Underwood notifications@github.com
wrote:

Thanks. What should the install path be? - I'm using non standard install
location for gubbins

—
You are receiving this because you commented.
Reply to this email directly, view it on GitHub
#173 (comment),
or mute the thread
https://github.com/notifications/unsubscribe-auth/AABeV8eTZWrU0zPGdo6lPigcjsa4vqItks5qYJYsgaJpZM4JSmtX
.

[antunderwood]

Thanks this worked

python setup.py install --prefix=/phengs/hpc_software/gubbins/2.0.0

[josemunozc]

I think this hasn't been added into the installation from source instructions yet. At the moment they are:

autoreconf -i
./configure [--prefix=$PREFIX]
make
[sudo] make install
cd python
[sudo] python3 setup.py install