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Input format is not clear #185

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danwiththeplan opened this issue Jan 18, 2017 · 1 comment
Closed

Input format is not clear #185

danwiththeplan opened this issue Jan 18, 2017 · 1 comment

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@danwiththeplan
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Hi, is it possible to get a clearer description of the expected input format?
run_gubbins.py [FASTA alignment]
I'm not clear what a FASTA alignment is exactly.
@andrewjpage
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Any application which can generate a whole genome multi-FASTA alignment can be used with Gubbins, such as Snippy.

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@andrewjpage @danwiththeplan