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install from source #34

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jacorvar opened this issue Feb 19, 2019 · 1 comment

jacorvar commented Feb 19, 2019

Would it be possible to install seroBA from source?

Thanks

Member

eppinglen commented Mar 1, 2019

yes this is possible. Please install all dependences as describe in the Documentation. For Example for Ubuntu 16.04 (Xenial):

Install the dependencies:

apt-get update
apt-get install --no-install-recommends -y build-essential cd-hit curl git libbz2-dev liblzma-dev mummer python python3-dev python3-setuptools python3-pip python3-tk python3-matplotlib unzip wget zlib1g-dev
wget -q https://raw.githubusercontent.com/sanger-pathogens/seroba/master/install_dependencies.sh && bash ./install_dependencies.sh

Once the dependencies are installed, install SeroBA:

git clone https://github.com/sanger-pathogens/seroba
cd seroba
python setup.py install
``

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