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Run Seroba with PneumoCat v1.2.1?? #77

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arif-tanmoy opened this issue Aug 18, 2023 · 2 comments
Open

Run Seroba with PneumoCat v1.2.1?? #77

arif-tanmoy opened this issue Aug 18, 2023 · 2 comments

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@arif-tanmoy
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Hi,
Noticed an issue while setting up the database for Seroba. The program is downloading an outdated version of the Pneumocat database (v1.1). The subsequent versions of Pneumocat have included important revisions, particularly on serotype 15A and serogroup 19.

Is there a way to run Seroba using the Pneumocat database v1.2.1??
Thanks.
@Oliver-Lorenz-dev
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Hello,
You can use this fork of seroBA to run with PneumoCaT v1.2.1: https://github.com/sanger-bentley-group/seroba

@arif-tanmoy
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Thanks, @Oliver-Lorenz-dev .
I will try out the forked version's code.

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@arif-tanmoy @Oliver-Lorenz-dev