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New XBB.1 + Orf8:G8* with S:486P in a branch with orf1a:A2621V (140 seqs, 26 countries) #94

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xz-keg opened this issue May 24, 2023 · 3 comments
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New XBB.1 + Orf8:G8* with S:486P in a branch with orf1a:A2621V (140 seqs, 26 countries) #94

xz-keg opened this issue May 24, 2023 · 3 comments
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Convergent evolution Lineages with convergent mutations designated S:486 To be proposed Green light for proposal
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XBB.1.43 XBB.1.43.1

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@xz-keg
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xz-keg commented May 24, 2023 •
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I find a new XBB.1 with S:486P lineage.

XBB.1(with orf8:G8*)+G11071A+C8127T(orf1a:A2621V)+A20713C+T23018C(S:486P) , which is clearly independent from XBB.1.5 so deserve designated as XBB.1.x

GISAID query: A20713C,T23018C,C8127T,G11071A
Number of seqs: 140(Australia 4 Austria 2 Canary Islands 1 England 11 Scotland 5 Wales 3 France 36 Fujian 1 Hong Kong 3 Germany 3 India 5 Indonesia 1 Ireland 1 Israel 1 Italy 5 Japan 3 Malaysia 1 Mauritius 1 Netherlands 1 Philipines 1 Poland 1 Romania 1 Russia 2 Singapore 3 South Korea 29 Sweden 1 Switzerland 2 USA 7 Ukraine 5

First seq: EPI_ISL_16997480 India 2023-1-3
Lastest seq: EPI_ISL_17670414 Singapore 2023-5-8

usher
Screenshot 2023-05-24 at 08 04 42
@FedeGueli
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To be proposed new, recent, widespread. Thx great catch! Avicz.

@FedeGueli FedeGueli added To be proposed Green light for proposal Convergent evolution Lineages with convergent mutations S:486 labels May 24, 2023
@FedeGueli
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(Wondering where it could have emerged, i bet somewhere in Africa)

@FedeGueli FedeGueli changed the title New XBB.1 with S:486P (140 seqs, 26 countries) New XBB.1 + Orf8:G8* with S:486P in a branch with orf1a:A2621V (140 seqs, 26 countries) May 24, 2023
@xz-keg
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xz-keg commented May 24, 2023 •
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(Wondering where it could have emerged, i bet somewhere in Africa)

There're too many under-sampled areas around the world so everywhere is possible given the wide distribution of this lineage.

@xz-keg xz-keg mentioned this issue May 24, 2023
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@xz-keg xz-keg closed this as completed May 24, 2023
@xz-keg xz-keg added this to the XBB.1.43 XBB.1.43.1 milestone Dec 17, 2023
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Convergent evolution Lineages with convergent mutations designated S:486 To be proposed Green light for proposal
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