pyproject.toml

[tool.poetry]
name = "minineedle"
version = "3.1.5"
description = "Needleman-Wunsch and Smith-Waterman algorithms in python for any iterable objects."
authors = ["S. Castillo-Lara <sergiocastillo@ub.edu>"]
license = "GPL3"
readme = "README.md"
homepage = "https://github.com/scastlara/minineedle"
repository = "https://github.com/scastlara/minineedle"

[tool.poetry.dependencies]
python = ">=3.9"

[tool.poetry.group.dev.dependencies]
pytest = "*"
pytest-cov = "*"
black = "*"
mypy = "*"
ruff = "*"

[tool.black]
line-length = 120
target_version = ["py311"]

[tool.ruff]
target-version = "py311"
line-length = 120
select = [
    "C9",  # mccabe
    "E",   # pycodestyle error
    "W",   # pycodestyle warning
    "F",   # pyflakes
    "B",   # bugbear
    "I",   # isort
    "C4",  # comprehensions
    "SIM", # simplify
    "N",   # pep8-naming
]
ignore = [
    "E501",   # line length (black handles it)
]

src = ["minineedle", "tests"]

[tool.pytest.ini_options]
addopts = """
    -s
    --cov
    --cov-report term-missing
    --cov-report=xml:./tests/coverage.xml
    --junitxml=./tests/junit.xml
"""

[tool.coverage.run]
omit = [
    "tests/*",
]

[tool.coverage.report]
fail_under = 90
exclude_lines = ["if TYPE_CHECKING:", "pragma: no cover"]


[tool.mypy]
strict=true

[tool.commitizen]
version = "3.1.5"
version_files = ["pyproject.toml:version"]
tag_format = "v$version"

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"