getSRAdbFile Problem

[GanQiao1990]

Error in download.file(url_sra, destfile = localfile, mode = "wb", method = method) :
srafile = getSRAdbFile(destdir = getwd(), destfile = "SRAmetadb.sqlite.gz", method="auto")
trying URL 'https://s3.amazonaws.com/starbuck1/sradb/SRAmetadb.sqlite.gz'
Error in download.file(url_sra, destfile = localfile, mode = "wb", method = method) :
cannot open URL 'https://s3.amazonaws.com/starbuck1/sradb/SRAmetadb.sqlite.gz'

srafile = getSRAdbFile(destdir = getwd(), destfile = "SRAmetadb.sqlite.gz", method="libcurl")
trying URL 'https://gbnci-abcc.ncifcrf.gov/backup/SRAmetadb.sqlite.gz'
Error in download.file(url_sra, destfile = localfile, mode = "wb", method = method) :
cannot open URL 'https://gbnci-abcc.ncifcrf.gov/backup/SRAmetadb.sqlite.gz'

[seandavi]

Hi, @allanharper. This is working for me today. If still not working for you, can you try using curl or accessing from a web browser the amazonaws link?

[cparsania]

Same problem I am facing today. I also tried downloading from AWS using wget. Didn't work.

library(SRAdb)
sqlfile <- getSRAdbFile()
#> Error in download.file(url_sra, destfile = localfile, mode = "wb", method = method): cannot open URL 'https://gbnci-abcc.ncifcrf.gov/backup/SRAmetadb.sqlite.gz'

^{Created on 2022-07-19 by the reprex package (v0.3.0)}