You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
The output shows:
Session Stop (Error: Server aborted session: No such file or directory)
Session Stop (Error: Server aborted session: No such file or directory)
Session Stop (Error: Server aborted session: No such file or directory)
Session Stop (Error: Server aborted session: No such file or directory)
Session Stop (Error: Server aborted session: No such file or directory)
Session Stop (Error: Server aborted session: No such file or directory)
experiment study sample run fasp
1 SRX000122 SRP000098 SRS000290 SRR000650 anonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR000/SRR000650/SRR000650.sra
2 SRX000122 SRP000098 SRS000290 SRR000658 anonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR000/SRR000658/SRR000658.sra
3 SRX000122 SRP000098 SRS000290 SRR000649 anonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR000/SRR000649/SRR000649.sra
4 SRX000122 SRP000098 SRS000290 SRR000657 anonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR000/SRR000657/SRR000657.sra
5 SRX000122 SRP000098 SRS000290 SRR000648 anonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR000/SRR000648/SRR000648.sra
6 SRX000122 SRP000098 SRS000290 SRR000655 anonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR000/SRR000655/SRR000655.sra
The files download properly when I use srcType = 'ftp'
However we need to find a way to make aspera client work and use fasp.
Any advice would be appreciated!
The text was updated successfully, but these errors were encountered:
When using the demo I keep getting stuck trying to use 'fasp' to download the "SRX000122" SRA files (towards the end of the demo).
getSRAfile( c("SRX000122"), sra_con, fileType = 'sra', srcType = 'fasp', ascpCMD = ascpCMD)
The output shows:
Session Stop (Error: Server aborted session: No such file or directory)
Session Stop (Error: Server aborted session: No such file or directory)
Session Stop (Error: Server aborted session: No such file or directory)
Session Stop (Error: Server aborted session: No such file or directory)
Session Stop (Error: Server aborted session: No such file or directory)
Session Stop (Error: Server aborted session: No such file or directory)
experiment study sample run fasp
1 SRX000122 SRP000098 SRS000290 SRR000650 anonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR000/SRR000650/SRR000650.sra
2 SRX000122 SRP000098 SRS000290 SRR000658 anonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR000/SRR000658/SRR000658.sra
3 SRX000122 SRP000098 SRS000290 SRR000649 anonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR000/SRR000649/SRR000649.sra
4 SRX000122 SRP000098 SRS000290 SRR000657 anonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR000/SRR000657/SRR000657.sra
5 SRX000122 SRP000098 SRS000290 SRR000648 anonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR000/SRR000648/SRR000648.sra
6 SRX000122 SRP000098 SRS000290 SRR000655 anonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR000/SRR000655/SRR000655.sra
The files download properly when I use srcType = 'ftp'
However we need to find a way to make aspera client work and use fasp.
Any advice would be appreciated!
The text was updated successfully, but these errors were encountered: