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Session Stop (Error: Server aborted session: No such file or directory) #34

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bweiler89 opened this issue Sep 29, 2020 · 0 comments
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@bweiler89
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When using the demo I keep getting stuck trying to use 'fasp' to download the "SRX000122" SRA files (towards the end of the demo).

getSRAfile( c("SRX000122"), sra_con, fileType = 'sra', srcType = 'fasp', ascpCMD = ascpCMD)

The output shows:
Session Stop (Error: Server aborted session: No such file or directory)
Session Stop (Error: Server aborted session: No such file or directory)
Session Stop (Error: Server aborted session: No such file or directory)
Session Stop (Error: Server aborted session: No such file or directory)
Session Stop (Error: Server aborted session: No such file or directory)
Session Stop (Error: Server aborted session: No such file or directory)
experiment study sample run fasp
1 SRX000122 SRP000098 SRS000290 SRR000650 anonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR000/SRR000650/SRR000650.sra
2 SRX000122 SRP000098 SRS000290 SRR000658 anonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR000/SRR000658/SRR000658.sra
3 SRX000122 SRP000098 SRS000290 SRR000649 anonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR000/SRR000649/SRR000649.sra
4 SRX000122 SRP000098 SRS000290 SRR000657 anonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR000/SRR000657/SRR000657.sra
5 SRX000122 SRP000098 SRS000290 SRR000648 anonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR000/SRR000648/SRR000648.sra
6 SRX000122 SRP000098 SRS000290 SRR000655 anonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR000/SRR000655/SRR000655.sra

The files download properly when I use srcType = 'ftp'

However we need to find a way to make aspera client work and use fasp.

Any advice would be appreciated!

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