The ControlFileGenerator is a graphical utility for generating control files for your G-PhoCS analysis.
The GUI consists of the following tabs: (follow them one by one to generate your control file)
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General - set the general setup features of your analysis (i/o, print factors, modeling features, and MCMC finetune values). You may use the given default values for quick generation of a setup file
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Tree - specify the population phylogeny using extended Newick format, associate each current population with a set of samples and each ancestral population with an initial split time value for sampling
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Mig-Bands - specify ordered pairs of migration bands (optional)
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Save - save your control file locally
*) Load - Load the settings of a previous made control file into the GUI
The ControlFileGenerator is written in Java and runs under JRE version 7 and up If you don't have it installed on your computer, you may download it from https://java.com/en/download/
To run the ControlFileGenerator just run the following from the command line (from the main G-PhoCS directory): ==> java -jar ControlFileGenerator/ControlFileGenerator.jar
or click on the jar file from your file system explorer
The ControlFileGenerator was written by Tal Bigel @ IDC Herzliya For comments and questions, please contact Ilan Gronau (ilan.gronau@idc.ac.il)