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generate_unidentified_table.py
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import json
IMAGE_URL = "https://storage.googleapis.com/serrelab/prj_fossils/2024/Unidentified/{}.jpg"
UNKNOWN_IMAGE_URL = "https://storage.googleapis.com/serrelab/fossil_lens/inference_concepts2/{}/image.jpg"
html_template = """
<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="UTF-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>Unidentified Fossils Predictions Table</title>
<style>
/* General Styles */
body {{
font-family: 'Inter', sans-serif;
background-color: #f4f7f8;
color: #333;
margin: 0;
padding: 0;
line-height: 1.6;
}}
.container {{
max-width: 900px;
margin: 40px auto;
padding: 20px;
background: #ffffff;
border-radius: 12px;
box-shadow: 0px 10px 30px rgba(0, 0, 0, 0.1);
}}
h1 {{
text-align: center;
font-size: 32px;
font-weight: bold;
color: #2c3e50;
margin-bottom: 20px;
}}
h3, h4 {{
color: #2c3e50;
margin-top: 20px;
}}
p {{
color: #555555;
margin-bottom: 15px;
}}
ul {{
margin-left: 20px;
}}
ul li {{
margin-bottom: 10px;
}}
/* Table Styles */
.table-container {{
max-height: 600px;
overflow-y: auto;
border-radius: 8px;
box-shadow: 0px 4px 10px rgba(0,0,0,0.1);
}}
table {{
width: 100%;
border-collapse: collapse;
background-color: #fff;
}}
thead th {{
position: sticky;
top: 0;
background-color: #2c3e50;
color: white;
padding: 12px;
font-size: 14px;
}}
th, td {{
padding: 12px;
text-align: center;
border-bottom: 1px solid #eaeaea;
}}
tr:hover {{
background-color: #f9f9f9;
}}
img {{
width: 80px;
height: auto;
border-radius: 8px;
}}
.fixed-button {{
position: fixed;
bottom: 20px;
right: 20px;
background-color: #4CAF50;
color: white;
border: none;
padding: 15px 30px;
border-radius: 30px;
cursor: pointer;
font-size: 16px;
transition: background-color 0.3s;
}}
.fixed-button:hover {{
background-color: #45a049;
}}
</style>
</head>
<body>
<div class="container">
<h1>Unidentified Fossils Predictions Table</h1>
<div class="table-container">
<table>
<thead>
<tr>
<th style="width: 10%;">Sr. No.</th>
<th style="width: 15%;">Fossil Name</th>
<th style="width: 15%;">Fossil Image</th>
<th style="width: 30%;">Top 5 Predictions</th>
<th style="width: 10%;">Plausible</th>
<th style="width: 10%;">Impossible</th>
<th style="width: 10%;">Maybe</th>
</tr>
</thead>
<tbody>
{table_rows}
</tbody>
</table>
</div>
</div>
<button class="fixed-button" onclick="downloadJSON()">Download Responses</button>
<script>
function downloadJSON() {{
let rows = document.querySelectorAll("tbody tr");
let data = [];
rows.forEach((row, index) => {{
let cells = row.querySelectorAll("td");
let fossilName = cells[1].innerText;
let selected = null;
// Get the selected radio button in the row
let radios = row.querySelectorAll('input[type="radio"]');
radios.forEach((radio) => {{
if (radio.checked) {{
selected = radio.value; // Get the value of the selected radio button
}}
}});
data.push({{
"Serial Number": index + 1,
"Fossil Name": fossilName,
"User Selection": selected
}});
}});
let blob = new Blob([JSON.stringify(data, null, 2)], {{ type: "application/json" }});
let a = document.createElement("a");
a.href = URL.createObjectURL(blob);
a.download = "unidentified_fossil_responses.json";
document.body.appendChild(a);
a.click();
document.body.removeChild(a);
}}
</script>
</body>
</html>
"""
with open("image2_predictions.json", 'r') as file:
unknown_image_predictions = json.load(file)
with open("unidentified_fossil_predictions.json", 'r') as file:
image_predictions = json.load(file)
# Generate table rows dynamically
table_rows = ""
for index, (key, value) in enumerate(unknown_image_predictions.items(), start=1):
predictions_html = "<br>".join([f'<a href="https://fel-thomas.github.io/Leaf-Lens/classes/{p}/" target="_blank">{p}</a>' for p in value])
row = f"""
<tr>
<td>{index}</td>
<td><a href="https://serre-lab.github.io/prj_fossil_unknown/pages/unidentified/page_{key}/" target="_blank">{key}</a></td>
<td><img src="{UNKNOWN_IMAGE_URL.format(key)}" alt="Fossil Image"></td>
<td>{predictions_html}</td>
<td><input type="radio" name="row{index}" value="Plausible"></td>
<td><input type="radio" name="row{index}" value="Impossible"></td>
<td><input type="radio" name="row{index}" value="Maybe"></td>
</tr>
"""
table_rows += row
total_unknown_images = len(unknown_image_predictions)
for index, (key, value) in enumerate(image_predictions.items(), start=1):
index = total_unknown_images + index
predictions_html = "<br>".join([f'<a href="https://fel-thomas.github.io/Leaf-Lens/classes/{p}/" target="_blank">{p}</a>' for p in value])
row = f"""
<tr>
<td>{index}</td>
<td><a href="https://serre-lab.github.io/prj_fossil_unknown/pages/unidentified/page_{key}/" target="_blank">{key}</a></td>
<td><img src="{IMAGE_URL.format(key)}" alt="Fossil Image"></td>
<td>{predictions_html}</td>
<td><input type="radio" name="row{index}" value="Plausible"></td>
<td><input type="radio" name="row{index}" value="Impossible"></td>
<td><input type="radio" name="row{index}" value="Maybe"></td>
</tr>
"""
table_rows += row
# Create the final HTML file
html_content = html_template.format(table_rows=table_rows)
# Save to an HTML file
with open("./docs/unidentified_table.md", "w") as f:
f.write(html_content)
print("HTML file generated: unidentified_table.md")