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CHANGELOG.md

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Changelog

  • v0.4.0
    • add an augument to AlignmentResult.AlignmentText() and AlignmentResult.CIGAR.
    • wfa-go: add a new flag -t for only showing the aligned region.
  • v0.3.1
    • use a more efficient data structure to store cigar operations.
    • slight speed improvement.
  • v0.3.0
    • faster speed and lower memory simply by changing the default value of OFFSETS_BASE_SIZE from 2048 to 128.
    • setting WAVEFRONTS_BASE_SIZE and OFFSETS_BASE_SIZE as global variables, not constants.
  • v0.2.3
    • fix adaptive reduction.
  • v0.2.2
    • fix a concurrency bug when using multiple aligners.
  • v0.2.1
    • fix missing of bounds checking in adaptive reduction.
  • v0.2.0
    • rewrite the whole package.
    • more accurate.
    • 2X faster than v0.1.0, lower memory.
  • v0.1.0
    • first version.
    • The speed is no ideal as the data structures and backtrace algorithm are inefficient.