DESCRIPTION

Type: Package
Package: ggcoverage
Title: Visualize Genome/Protein Coverage with Various Annotations
Version: 1.4.0
Authors@R: c(
    person("Yabing", "Song", , "songyb0519@gmail.com", role = c("aut", "cre", "cph")),
    person("Michael", "Jahn", , "jahn@mpusp.mpg.de", role = c("aut", "cph"),
           comment = c(ORCID = "0000-0002-3913-153X"))
  )
Maintainer: Michael Jahn <jahn@mpusp.mpg.de>
Description: The goal of `ggcoverage` is to visualize coverage tracks from
    genomics, transcriptomics or proteomics data. It contains functions to
    load data from BAM, BigWig, BedGraph, txt, or xlsx files, create
    genome/protein coverage plots, and add various annotations including
    base and amino acid composition, GC content, copy number variation
    (CNV), genes, transcripts, ideograms, peak highlights, HiC contact
    maps, contact links and protein features. It is based on and
    integrates well with `ggplot2`.
License: MIT + file LICENSE
URL: https://showteeth.github.io/ggcoverage/,
    https://github.com/showteeth/ggcoverage
BugReports: https://github.com/showteeth/ggcoverage/issues
Imports: 
    BiocParallel,
    Biostrings,
    dplyr,
    GenomeInfoDb,
    GenomicAlignments,
    GenomicRanges,
    ggh4x,
    ggpattern,
    ggplot2,
    ggrepel,
    grDevices,
    gridExtra,
    IRanges,
    methods,
    patchwork,
    rlang,
    Rsamtools,
    rtracklayer,
    scales,
    stats,
    utils
Suggests: 
    BiocStyle,
    BSgenome.Hsapiens.UCSC.hg19,
    ggbio,
    ggforce,
    graphics,
    HiCBricks,
    HiCDataHumanIMR90,
    htmltools,
    knitr,
    rmarkdown
VignetteBuilder: 
    knitr
biocViews:
Encoding: UTF-8
RoxygenNote: 7.3.1