README.md

liege_sp

Introduction

In this workspace found several sub-directories which contain GWAS data processing scriptrs and implementations for clustering algorithms.

Clustering Algorithms

• CAST algorithms +# DBSCAN

Processing

• .bed file to Clustering INPUT

Working pileline

1. For each GWAS dataset( .bed ), split to obtain 23 separate files, one for each chromosome
2. Use the script to convert a .bed to a .csv file compatible with the clustering algorithms
3. Perform the cluster analysis on the generated output