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Download Inputs from SRA #9

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skchronicles opened this issue Jan 14, 2021 · 1 comment
Open

Download Inputs from SRA #9

skchronicles opened this issue Jan 14, 2021 · 1 comment
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enhancement New feature or request rna run rna-seek run related task

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Download from SRA

Add a command-line option to pull FastQ files from SRA using fastq-dump.

It is worth stating that fastq-dump may be depreciated in the near future so it may be worth using fasterq-dump (actively being developed NCBI) instead. fasterq-dump does not have all the same functionality as fastq-dump but I expect in the near future it will.

Screenshot from sra-tools Github repo
image

Here is more information about using fasterq-dump.
@skchronicles skchronicles self-assigned this Jan 14, 2021
@skchronicles skchronicles added the enhancement New feature or request label Jan 14, 2021
@skchronicles skchronicles mentioned this issue Mar 25, 2021
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Suggestion from @kopardev for how to implement this feature:
image

@skchronicles skchronicles added the rna run rna-seek run related task label Mar 25, 2021
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