pyproject.toml

[build-system]
requires = ["setuptools>=45", "wheel", "setuptools_scm[toml]>=6.2"]
build-backend = "setuptools.build_meta"

[project]
name = "SpaHDmap"
version = "0.0.6"
description = "Interpretable high-definition dimension reduction of spatial transcriptomics data by SpaHDmap"
readme = "README.md"
requires-python = ">=3.9"
license = {text = "MIT License"}
classifiers = [
    "Development Status :: 5 - Production/Stable",
    "Intended Audience :: Developers",
    "Intended Audience :: Science/Research",
    "Natural Language :: English",
    "Operating System :: POSIX :: Linux",
    "Operating System :: MacOS :: MacOS X",
    "Operating System :: Microsoft :: Windows",
    "Typing :: Typed",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3 :: Only",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "Topic :: Scientific/Engineering :: Mathematics",
]
keywords = [
    "spatial transcriptomics",
    "bioinformatics",
    "dimension reduction",
    "deep learning",
]

authors = [
    {name = "Kun Qian", email = "kunqian@stu.pku.edu.cn"},
    {name = "Junjie Tang", email = "junjie.tang@pku.edu.cn"},
]

maintainers = [
    {name = "Kun Qian", email = "kunqian@stu.pku.edu.cn"},
]

dependencies = [
    "numpy>=1.22",
    "cython>=0.29.24",
    "torch>=1.12",
    "scikit-learn>=1.0",
    "dask==2024.8.0",
    "scikit-network",
    "squidpy",
    "matplotlib",
    "tqdm",
    "h5py",
    "scanpy",
    "anndata",
    "pandas",
    "scikit-image",
    "opencv-python",
    "imagecodecs",
    "scipy",
]

[project.optional-dependencies]
docs = [
    "sphinx>=8.0.1",
    "furo>=2024.3.31",
    "myst-parser>=2.2.0",
    "nbsphinx>=0.8.11",
    "sphinx-tippy>=0.4.1",
    "sphinx-autodoc-typehints>=1.10.3",
    "sphinx_copybutton>=0.5.0",
    "sphinx_design>=0.3.0",
]

[project.urls]
Homepage = "https://github.com/sldyns/SpaHDmap"

[tool.setuptools]
packages = ["SpaHDmap"]

[tool.setuptools.package-data]
SpaHDmap = ["utils/*", "data/*", "model/*"]

[tool.setuptools_scm]