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54 Open 52 Closed
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Issues list

Error or warning for PTM without corresponding modification in PTM list Discussion
#417 opened Oct 11, 2018 by acesnik
Certain modifications are kept in features other than "modified residue" bug
#400 opened Sep 10, 2018 by leahvschaffer
18
Is there a safer way to use MonoisotopicMass as a double other than just casting it Maintenance The user isn't impacted by it, it's purely behind the scenes
#390 opened Sep 5, 2018 by acesnik
1
Modification TerminusLocalization enum was easier to use Maintenance The user isn't impacted by it, it's purely behind the scenes
#389 opened Sep 5, 2018 by acesnik
2
Some peptides with large negative modification masses return negative mass fragments bug
#362 opened Jul 18, 2018 by ianhirsch
@ianhirsch
agree on fragment ions for dissociation types Discussion
#360 opened Jul 17, 2018 by trishorts
update CV terms in dictionary of mzml (and related) for all available dissociation types
#358 opened Jul 17, 2018 by trishorts
Change TerminusType to ProteaseCleavageTerminusSide
#357 opened Jul 17, 2018 by trishorts
Figure out how to copy proteases.tsv to build directory Maintenance The user isn't impacted by it, it's purely behind the scenes
#354 opened Jul 12, 2018 by acesnik
add unit test to read metamorpheus gptmd db modifications
#353 opened Jul 11, 2018 by trishorts
3
One of the TestPeakTrimming tests sometimes fails because of random peak generation bug
#350 opened Jul 11, 2018 by rmillikin
@ianhirsch
Working with splice variant entries in UniProt XML enhancement
#329 opened May 24, 2018 by acesnik
2
Read .mzML file report: invalid uri the hostname could not be parsed bug
#300 opened Feb 26, 2018 by lonelu
@ianhirsch
4
Do two tech-reps to test deconvolution
#270 opened Oct 27, 2017 by stefanks
2
filter only ms1 scans in summedmsdatafile
#269 opened Oct 25, 2017 by leahvschaffer
deconvolution wishlist
#264 opened Oct 23, 2017 by leahvschaffer
11
Proteome Exchange Submission fail bug
#259 opened Oct 16, 2017 by stefanks
Fix "kelleherCustomType" output
#249 opened Oct 3, 2017 by stefanks
1
Single spectrum deconvolution does not pick correct peak if within tolerance bug
#245 opened Oct 2, 2017 by stefanks
chemical formula in unimod standard
#244 opened Sep 27, 2017 by trishorts
2
Updating readme Documentation
#235 opened Aug 24, 2017 by acesnik
1
Hierarchical modifications
#229 opened Aug 18, 2017 by stefanks
Add Para-Medic Tool enhancement
#216 opened Aug 2, 2017 by trishorts
2
Add MGF Writer
#211 opened Jul 28, 2017 by trishorts
Read in "cross-link" features in order to identify ubiquitinations
#179 opened May 11, 2017 by stefanks
ProTip! What’s not been updated in a month: updated:<2025-02-08.