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JATS-archivearticle1.dtd
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JATS-archivearticle1.dtd
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<!-- ============================================================= -->
<!-- MODULE: Journal Archiving and Interchange DTD (MathML 2.0)-->
<!-- VERSION: ANSI/NISO JATS Version 1.0 (Z39.96-2012) -->
<!-- DATE: November 2013 -->
<!-- -->
<!-- ============================================================= -->
<!-- ============================================================= -->
<!-- PUBLIC DOCUMENT TYPE DEFINITION -->
<!-- TYPICAL INVOCATION -->
<!--
"-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD v1.1d1 20130915//EN"
Delivered as file "JATS-archivearticle1.dtd"
Available at:
http://jats.nlm.nih.gov/archiving/1.1d1/JATS-archivearticle1.dtd
-->
<!-- ============================================================= -->
<!-- ============================================================= -->
<!-- SYSTEM: Journal Archiving and Interchange DTD of the -->
<!-- JATS DTD Suite -->
<!-- -->
<!-- PURPOSE: DTD to describe a full-text journal article -->
<!-- -->
<!-- The Journal Archiving and Interchange DTD is an -->
<!-- application of the ANSI/NISO Z39.96 JATS Journal -->
<!-- Article Tag Set. It describes journal articles -->
<!-- and some non-article material such as product -->
<!-- and book reviews for repository or interchange -->
<!-- purposes. It describes both the metadata for a -->
<!-- journal article and the full content of -->
<!-- the article. -->
<!-- -->
<!-- This DTD was constructed using the modules in the -->
<!-- JATS DTD Suite, using almost no customization. -->
<!-- -->
<!-- TAG SET SPONSOR -->
<!-- National Center for Biotechnology -->
<!-- Information (NCBI) -->
<!-- National Library of Medicine (NLM) -->
<!-- -->
<!-- CREATED FOR: -->
<!-- This DTD was created from the JATS DTD Suite. -->
<!-- Digital archives and publishers may use the -->
<!-- DTD as is for markup of journal literature or -->
<!-- related material for archiving and transferring -->
<!-- such material between archives or create a -->
<!-- custom XML DTD from the Suite for -->
<!-- these purposes. -->
<!-- -->
<!-- This DTD is in the public domain. An organization -->
<!-- that wishes to create its own DTD from the suite -->
<!-- may do so without permission from NLM. -->
<!-- -->
<!-- The suite has been set up to be extended using a -->
<!-- new DTD file and a new DTD-specific customization -->
<!-- module to redefine the many Parameter Entities. -->
<!-- Do not modify the suite directly or redistribute -->
<!-- modified versions of the suite. -->
<!-- -->
<!-- In the interest of maintaining consistency and -->
<!-- clarity for potential users, NLM requests: -->
<!-- -->
<!-- 1. If you create a DTD from the JATS DTD Suite -->
<!-- and intend to stay compatible with the suite, -->
<!-- then please include the following statement -->
<!-- as a comment in all of your DTD modules: -->
<!-- "Created from, and fully compatible with, -->
<!-- the ANSI/NISO Z39.96 Journal Article Tag -->
<!-- Suite (JATS)." -->
<!-- -->
<!-- 2. If you alter one or more modules of the suite, -->
<!-- then please rename your version and all its -->
<!-- modules to avoid any confusion with the -->
<!-- original suite. Also, please include the -->
<!-- following statement as a comment in all your -->
<!-- DTD modules: -->
<!-- "Based in part on, but not fully compatible -->
<!-- with, the ANSI/NISO Z39.96 Journal Article -->
<!-- Tag Suite (JATS)." -->
<!-- -->
<!-- ORIGINAL CREATION DATE: -->
<!-- December 2002 -->
<!-- -->
<!-- CREATED BY: Mulberry Technologies, Inc. for the NISO Z39.96 -->
<!-- Working Group. Mulberry Technologies was -->
<!-- supported by National Center for Biotechnology -->
<!-- Information (NCBI), a center of the US National -->
<!-- Library of Medicine (NLM). -->
<!-- -->
<!-- The Journal Archiving and Interchange DTD is -->
<!-- built from the JATS DTD Suite. -->
<!-- -->
<!-- This DTD and the Suite are a continuation of -->
<!-- the work done by NCBI, Mulberry Technologies, -->
<!-- and Inera, Inc. on the NLM Journal Archiving -->
<!-- and Interchange DTD Suite, which was originally -->
<!-- released in December, 2002. -->
<!-- -->
<!-- NLM thanks the Harvard University Libraries, both -->
<!-- for proposing that a draft archiving NLM DTD for -->
<!-- life sciences journals be extended to accommodate -->
<!-- journals in all disciplines and for sponsoring -->
<!-- Inera Inc.'s collaboration with other DTD -->
<!-- authors in completing NLM Version 1.0. The -->
<!-- Andrew W. Mellon Foundation provided support for -->
<!-- these important contributions. -->
<!-- -->
<!-- Suggestions for refinements and enhancements to -->
<!-- this DTD should be sent in email to: -->
<!-- jats@ncbi.nlm.nih.gov -->
<!-- ============================================================= -->
<!-- ============================================================= -->
<!-- DTD VERSION/CHANGE HISTORY -->
<!-- ============================================================= -->
<!--
=============================================================
Version Reason/Occasion (who) vx.x (yyyy-mm-dd)
=============================================================
NISO JATS Version 1.1d1 (DAL/BTU) v1.1 (2013-11-15)
ANSI/NISO Z39.96-2012 (pre-release for V1.0 BITS; Version 1.1)
NISO JATS Standing Committee met and answered the requests and
suggestions from the NISO request forms.
Details concerning ANSI/NISO Z39.96-2012 JATS-based DTDs, XSDs,
RNGs and supporting documentation are available at
http://jats.nlm.nih.gov/1.1/
16. DTD Version - Updated the DTD-version attribute to "1.1d1" and
the formal public identifier to the date: "v1.1d1 20130915//EN".
15. GLOBAL ATTRIBUTES - Added the new module for Common (global)
attributes: %JATS-common-atts.ent;, called in before the
customizations models module.
14. GLOBAL ATTRIBUTES - Added the new parameter entity
%jats-common-atts;
to every element in this module. This PE adds (for now) the
@id attribute and the @xml:base attribute to every element,
whether metadata or narrative.
Since the @id in this parameter entity is optional, a second
parameter entity jats-common-atts-id-required was also added.
The two are kept in sync with the jats-base-atts parameter
entity.
This added a new attribute list to:
- back
- front
- front-stub
13. ABSTRACTS AND KEYWORDS
Changed "abstract*" to "(%abstract.class;)*"
and "kwd-group*" to "(%kwd-group.class;)*" since those
classes now exist. Elements should have a limited number of
ways to be invoked.
- article-meta (through %article-meta-model;)
- front-stub (through %front-stub-model;)
=============================================================
NISO JATS Version 1.0 (DAL/BTU) v1.0 (2012-xx-xx)
ANSI/NISO Z39.96-2012 (Version 1.0)
Details concerning ANSI/NISO Z39.96-2012 JATS-based DTDs, XSDs,
RNGs and supporting documentation are available at
http://jats.nlm.nih.gov/1.0/
12. RELATED OBJECT - Added <related-object> everywhere
<related-article> was used, including inside
<front-stub> using front-stub-model.
11. Updated the DTD-version attribute to "1.0" and the formal
public identifier to the date: "v1.0 20120330//EN".
=============================================================
Version 0.4 (DAL/BTU) v0.4 (2011-01-31)
This Tag Set is in the process of becoming a NISO standard.
The version numbers are starting over from 0.4", as a Trial
Use Draft, to be made into "Version 1.0" when the Tag Suite
becomes a NISO standard. Thus, the version number that would
have been "NLM Version 3.1 Draft" has become NISO JATS
"Version 0.4".
Details on NISO Trial Use Draft Version 0.4 are available at
http://jats.nlm.nih.gov/JATS-0.4.
10. Updated the DTD-version attribute to "0.4"
9. Updated the public identifier to "v0.4 20110131",
modified the formal public identifier to include "JATS (Z39.96)",
and the filename as delivered to include "JATS" and the
new version number "0".
8. BODY ATTRIBUTES - Added attribute list and new PE %body-atts;
to the model of <body>. The only current attribute is
@specific-use, which indicates, for example, not a real
tagged XML body, but a 'bag of words" for indexing purposes.
7. KEYWORD GROUP - Made <kwd-group> repeatable inside
<front-stub> by modifying %front-stub-model;
6. I18N - Changed the default for @xml:lang from "en" to
#IMPLIED, so that the @xml:lang would inherit properly and
not need to be over-ridden in
- <sub-article> through %sub-article-atts;
- <response> through %response-atts;
5. AFFILIATION ALTERNATIVES - Added the element <aff-alternatives>
to <front-stub> through %front-stub-model;. This element
will hold multiple <aff>s that are a representation of a
single affiliation, for example, the name of an institution
in two languages or two scripts.
4. FRONT MATTER - Modified %front-model; to add the elements:
ack | bio | fn-group | glossary (via %front.class;)
to front matter content model.
3. LANGUAGE CODES - Codes for languages as well as variants,
transliterations, regions, scripts, and combinations
such as "Jpan"(Han + Hiragana + Katakana). These values should be
taken from RFC 5646/W3C/IANA Subtag Registry recommendations
and can be found online at:
http://www.iana.org/assignments/language-subtag-registry
=============================================================
Version 3.0 (DAL/BTU) v3.0 (2007-10-31)
Version 3.0 is the first non-backward-compatible release.
In addition to the usual incremental changes, some
elements and attributes have been renamed and/or remodeled
to better meet user needs and to increase tag set consistency.
All module change histories are available through the Tag Suite
web site at http://dtd.nlm.nih.gov.
Details on version 3.0 are available at
http://dtd.nlm.nih.gov/3.0.
2. Changed default @xml:lang from "EN" from "en" to match latest
RFC 4646/W3C/IANA Subtag Registry recommendations
1. Updated public identifier to "v3.0 20080202//EN" -->
<!-- ============================================================= -->
<!-- DESIGN CONSIDERATIONS -->
<!-- ============================================================= -->
<!-- MODULAR DTD LIBRARY
A set of journal archiving and interchange
DTD modules was written as the basis for
publishing, interchange, and repository
DTDs, with the intention that DTDs for
specific purposes, such as this Journal
Archiving and Interchange DTD, would be
developed based on them.
This archiving DTD has been designed to
be descriptive, open, and inclusive to
allow journal articles to be translated into
this format as conveniently as possible
from a wide variety of proprietary journal
article DTDs (such as Blackwell, Keton, and
Ovid).
This Archiving DTD has been developed from
the JATS DTD Suite modules, in the approved
manner, making changes to the declarations
in those modules by over-riding Parameter
Entity contents by redefining the
entities in the
%archivecustomize.ent;
module, which is called from this DTD file.
No changes to any of the original JATS DTD
Suite modules are required in order to
use this DTD. -->
<!-- ============================================================= -->
<!-- MODULES OF MODULES INVOKED -->
<!-- ============================================================= -->
<!-- MODULE TO NAME DTD-SPECIFIC MODULES -->
<!-- Names all DTD-specific external modules -->
<!ENTITY % archivecustom-modules.ent
PUBLIC
"-//NLM//DTD JATS (Z39.96) Journal Archiving DTD-Specific Modules v1.1d1 20130915//EN"
"JATS-archivecustom-modules1.ent" >
%archivecustom-modules.ent;
<!-- MODULE TO NAME THE MODULES -->
<!-- Declares all the external modules that are
part of the modular JATS DTD Suite library.
Thus it does NOT declare itself;
the DTD-specific module-of-modules;
any of the DTD-specific class,
mix, or model over-ride modules; or any new
new content modules specific to this DTD.
Those are declared in the DTD-specific
module of modules.
Since this module declares but does not
invoke modules, this DTD then invokes any
modules it uses by referencing the external
Parameter Entities defined in the Module of
Modules. To include a set of elements (such
as all the lists or the MathML elements) this
module defines the external Parameter Entity
for the module(s) that contains the MathML
declarations and the DTD references that
entity. -->
<!ENTITY % modules.ent PUBLIC
"-//NLM//DTD JATS (Z39.96) JATS DTD Suite Module of Modules v1.1d1 20130915//EN"
"JATS-modules1.ent" >
%modules.ent;
<!-- ============================================================= -->
<!-- SET UP COMMON (ALL ELEMENT) ATTRIBUTES -->
<!-- ============================================================= -->
<!-- COMMON ATTRIBUTES MODULE -->
<!-- Set up the common attributes, those used on
nearly all elements.
Must be called before the custom models
module. -->
%JATS-common-atts.ent;
<!-- ============================================================= -->
<!-- CUSTOMIZATION MODULES INVOKED -->
<!-- Note: These modules must be called after -->
<!-- all Module of Modules but before any other -->
<!-- modules. Unlike any other grouping, order -->
<!-- of these modules matters. -->
<!-- ============================================================= -->
<!-- DTD-SPECIFIC CLASS CUSTOMIZATIONS MODULE -->
<!-- Names the module that holds the DTD-specific
class definitions for the Journal Archiving
and Interchange DTD that over-rides the Suite
defaults.
(Defined in %archivecustom-modules.ent; ) -->
%archivecustom-classes.ent;
<!-- DEFAULT ELEMENT CLASSES MODULE -->
<!-- Names the module that holds the standard
class definitions for the JATS DTD Suite. -->
%default-classes.ent;
<!-- DTD-SPECIFIC MIX CUSTOMIZATIONS MODULE -->
<!-- Set up the Parameter Entities and element
class definitions that will be used to
over-ride some element mixes in this DTD.
(Defined in %archivecustom-modules.ent; ) -->
%archivecustom-mixes.ent;
<!-- DEFAULT MIX CUSTOMIZATIONS MODULE -->
<!-- Names the module that holds the standard
mix definitions for the JATS DTD Suite. -->
%default-mixes.ent;
<!-- DTD-SPECIFIC MODELS/ATTRIBUTES CUSTOMIZATIONS
MODULE -->
<!-- Names the module that holds the over-rides
of content models, attribute lists, elements
lists to be used in content models, and
attribute values. These are DTD-specific.
(Defined in %archivecustom-modules.ent; ) -->
%archivecustom-models.ent;
<!-- ============================================================= -->
<!-- COMMON (SHARED) ELEMENTS MODULE INVOKED -->
<!-- ============================================================= -->
<!-- COMMON (SHARED) DECLARATIONS -->
<!-- Declarations for elements, attributes,
entities, and Notations that are shared by
more than one class module. Note: Must be
called before any of the class modules. -->
%common.ent;
<!-- ============================================================= -->
<!-- JOURNAL ARTICLE CLASS ELEMENTS (alpha) -->
<!-- ============================================================= -->
<!-- ARTICLE METADATA ELEMENTS -->
%articlemeta.ent;
<!-- BACK MATTER ELEMENTS -->
%backmatter.ent;
<!-- DISPLAY (GRAPHICAL) ELEMENTS -->
%display.ent;
<!-- FORMATTING ELEMENT CLASSES -->
<!-- Elements that change rendition/display. -->
%format.ent;
<!-- FUNDING ELEMENTS -->
<!-- Elements that describe the sponsorship or
open access -->
%funding.ent;
<!-- JOURNAL METADATA ELEMENTS -->
%journalmeta.ent;
<!-- LINK CLASS ELEMENTS -->
%link.ent;
<!-- LIST CLASS ELEMENTS -->
%list.ent;
<!-- MATH ELEMENTS -->
%math.ent;
<!-- NLM CITATION ELEMENT -->
%nlmcitation.ent;
<!-- PARAGRAPH-LEVEL ELEMENTS -->
%para.ent;
<!-- PHRASE-LEVEL ELEMENTS -->
%phrase.ent;
<!-- BIBLIOGRAPHIC REFERENCE (CITATION)
CLASS ELEMENTS -->
%references.ent;
<!-- RELATED OBJECT ELEMENT -->
<!-- Defines the <related-object> element to
describe a related object such as a
related book or a dataset. -->
%related-object.ent;
<!-- SECTION ELEMENTS -->
%section.ent;
<!-- ============================================================= -->
<!-- THE REST OF THE EXTERNAL MODULES INVOKED -->
<!-- ============================================================= -->
<!-- MATHML SETUP MODULE -->
<!-- Invoke the MathML modules -->
%mathmlsetup.ent;
<!-- XHTML TABLE SETUP MODULE -->
<!-- Set up the necessary Parameter Entity values
and then invoke XHTML (HTML 4.0) table
module -->
%XHTMLtablesetup.ent;
<!-- SPECIAL CHARACTERS DECLARATIONS -->
<!-- Standard XML special character entities
used in this DTD -->
%xmlspecchars.ent;
<!-- CUSTOM SPECIAL CHARACTERS DECLARATIONS -->
<!-- Custom special character entities created
specifically for use in this DTD Suite -->
%chars.ent;
<!-- NOTATION DECLARATIONS MODULE -->
%notat.ent;
<!-- ============================================================= -->
<!-- PARAMETER ENTITIES FOR ATTRIBUTE LISTS -->
<!-- ============================================================= -->
<!-- DTD VERSION -->
<!-- What version of this DTD was used to make
the document instance under consideration.
Note that this is a fixed value that should
change every time the DTD changes versions or
revisions. -->
<!ENTITY % dtd-version
"dtd-version
CDATA #FIXED '1.1d1'" >
<!-- ARTICLE ATTRIBUTES -->
<!-- Attributes for the top-level element
<article> -->
<!ENTITY % article-atts
"%jats-common-atts;
article-type
CDATA #IMPLIED
specific-use
CDATA #IMPLIED
xml:lang NMTOKEN 'en'
%dtd-version;
%XLINK.xmlns.attrib;
%MATHML.xmlns.attrib;
%Schema.xmlns.attrib;" >
<!-- BACK ATTRIBUTES -->
<!-- Attributes for the <back> element -->
<!ENTITY % back-atts
"%jats-common-atts;" >
<!-- BODY ATTRIBUTES -->
<!-- Attributes for the <body> element -->
<!ENTITY % body-atts
"%jats-common-atts;
specific-use
CDATA #IMPLIED" >
<!-- FRONT ATTRIBUTES -->
<!-- Attributes for the <front> element -->
<!ENTITY % front-atts
"%jats-common-atts;" >
<!-- FRONT STUB ATTRIBUTES -->
<!-- Attributes for the <front-stub> element -->
<!ENTITY % front-stub-atts
"%jats-common-atts;" >
<!-- SUB-ARTICLE ATTRIBUTES -->
<!-- Attributes for the <sub-article> element -->
<!ENTITY % sub-article-atts
"%jats-common-atts;
article-type
CDATA #IMPLIED
specific-use
CDATA #IMPLIED
xml:lang NMTOKEN #IMPLIED" >
<!-- RESPONSE ATTRIBUTES -->
<!-- Attributes for the <response> element -->
<!ENTITY % response-atts
"%jats-common-atts;
response-type
CDATA #IMPLIED
specific-use
CDATA #IMPLIED
xml:lang NMTOKEN #IMPLIED" >
<!-- ============================================================= -->
<!-- JOURNAL ARTICLE ELEMENTS -->
<!-- ============================================================= -->
<!-- ARTICLE MODEL (LIMITED) -->
<!-- Article-like model used for, for example,
a short sub-article such as a news brief that
is contained in side a journal article. -->
<!ENTITY % article-short-model
"((front | front-stub), body?, back?,
floats-group?)" >
<!-- ARTICLE MODEL WITH SUBARTICLE OR RESPONSE -->
<!-- Typical journal article model, which may
contain extended components, such as
sub-articles or responses, -->
<!ENTITY % article-full-model
"(front, body?, back?, floats-group?,
(sub-article* | response*) )" >
<!-- ARTICLE -->
<!-- The complete content of a journal article.
Details at:
http://jats.nlm.nih.gov/archiving/tag-library/1.0/index.html?elem=article
-->
<!ELEMENT article %article-full-model; >
<!ATTLIST article
%article-atts; >
<!-- ============================================================= -->
<!-- FRONT MATTER ELEMENTS -->
<!-- ============================================================= -->
<!-- FRONT MATTER MODEL -->
<!-- Model for the <front> matter (the header
metadata) of a journal article) -->
<!ENTITY % front-model "(journal-meta?, article-meta,
(%list.class; | %front.class; |
%front-back.class;)* )" >
<!-- FRONT MATTER -->
<!-- The metadata concerning an article, such as
the name and issue of the journal in which it
appears and the name and author(s) of the
article.
Details at:
http://jats.nlm.nih.gov/archiving/tag-library/1.0/index.html?elem=front
-->
<!ELEMENT front %front-model; >
<!ATTLIST front
%front-atts; >
<!-- ============================================================= -->
<!-- BODY ELEMENTS -->
<!-- ============================================================= -->
<!-- BODY MODEL -->
<!-- Content model for the Body (main textual
content) of a journal article. -->
<!ENTITY % body-model "((%para-level;)*, (%sec-level;)*,
sig-block?)" >
<!-- BODY OF THE ARTICLE -->
<!-- The main textual portion of the article that
conveys the content.
Details at:
http://jats.nlm.nih.gov/archiving/tag-library/1.0/index.html?elem=body
-->
<!ELEMENT body %body-model; >
<!ATTLIST body
%body-atts; >
<!-- ============================================================= -->
<!-- BACK MATTER ELEMENTS -->
<!-- ============================================================= -->
<!-- BACK MATTER MODEL -->
<!-- Content model for the Back Matter (ancillary
material such as appendices) of a journal
article. -->
<!ENTITY % back-model "(label?, title*,
(%doc-back-matter-mix;)* )" >
<!-- BACK MATTER -->
<!-- Ancillary or supporting material not included
as part of the main textual content of a
journal article, for example appendices and
acknowledgments.
Details at:
http://jats.nlm.nih.gov/archiving/tag-library/1.0/index.html?elem=back
-->
<!ELEMENT back %back-model; >
<!ATTLIST back
%back-atts; >
<!-- ============================================================= -->
<!-- SUBARTICLE -->
<!-- ============================================================= -->
<!-- SUBARTICLE MODEL -->
<!-- Content model for the <sub-article> element
-->
<!ENTITY % sub-article-model
"( (front | front-stub), body?, back?,
floats-group?,
(sub-article* | response*) )" >
<!-- SUBARTICLE -->
<!-- An article that is completely contained
inside another article. Both the article and
the subarticle have their own metadata.
Details at:
http://jats.nlm.nih.gov/archiving/tag-library/1.0/index.html?elem=sub-article
-->
<!ELEMENT sub-article %sub-article-model; >
<!ATTLIST sub-article
%sub-article-atts; >
<!-- FRONT MODEL STUB -->
<!-- Content model for the <front-stub> element,
a reduced metadata set for use in
sub-articles and responses. -->
<!ENTITY % front-stub-model
"(article-id*, article-categories?,
title-group?,
(%contrib-group.class; |
%aff-alternatives.class; | %x.class;)*,
author-notes?, pub-date*,
volume?, volume-id*, volume-series?,
issue?, issue-id*, issue-title*,
issue-sponsor*, issue-part?, isbn*,
supplement?,
( ( (fpage, lpage?)?, page-range?) |
elocation-id )?,
(%address-link.class; | product |
supplementary-material)*,
history?, permissions?, self-uri*,
(%related-article.class;)*,
(%abstract.class;)*,
trans-abstract*, (%kwd-group.class;)*,
funding-group*, conference*, counts?,
custom-meta-group?)" >
<!-- STUB FRONT METADATA -->
<!-- A reduced metadata set for use in
sub-articles and responses, which will
inherit metadata not defined in the stub
from the enclosing article
Details at:
http://jats.nlm.nih.gov/archiving/tag-library/1.0/index.html?elem=front-stub
-->
<!ELEMENT front-stub %front-stub-model; >
<!ATTLIST front-stub
%front-stub-atts; >
<!-- ============================================================= -->
<!-- RESPONSE ELEMENTS -->
<!-- ============================================================= -->
<!-- RESPONSE -->
<!-- Reply, response, or commentary concerning the
journal article.
Details at:
http://jats.nlm.nih.gov/archiving/tag-library/1.0/index.html?elem=response
-->
<!ELEMENT response %article-short-model; >
<!ATTLIST response
%response-atts; >
<!-- ================== End Journal Archiving and Interchange DTD -->