Defect: install.sh ignores -M /opt/amazon/openmpi and wants to install MPICH

[jeffhammond]

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• I am reporting a bug others will be able to reproduce and not asking a question or requesting a new feature.

System information including:

• OpenCoarrays Version:

[jehammond@ip-10-0-0-25 OpenCoarrays]$ ./install.sh --version
OpenCoarrays 2.9.2

OpenCoarrays installer
Copyright (C) 2015-2016 Sourcery, Inc.
Copyright (C) 2015-2016 Sourcery Institute

OpenCoarrays comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of install.sh under the terms of the
BSD 3-Clause License.  For more information about these matters, see
http://www.sourceryinstitute.org/license.html

$ git log -n 1
commit ef8069d94ecd3a0d93e0d4413a63c2366b894130 (HEAD -> main, origin/main, origin/HEAD)
Merge: 5c4bd62 02dce3e
Author: Brad Richardson <everythingfunctional@protonmail.com>
Date:   Wed Mar 17 16:56:47 2021 -0500

    Merge pull request #730 from sourceryinstitute/download-gcc-release-tar-balls
    
    feat(install.sh): download GCC release tar balls

• Fortran Compiler:

$ gfortran -v
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/aarch64-redhat-linux/7/lto-wrapper
Target: aarch64-redhat-linux
Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,objc,obj-c++,fortran,ada,go,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --disable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-libsanitizer --enable-gnu-indirect-function --disable-libcilkrts --enable-libatomic --disable-libquadmath --enable-libitm --build=aarch64-redhat-linux
Thread model: posix
gcc version 7.3.1 20180712 (Red Hat 7.3.1-13) (GCC) 

• C compiler used for building lib:

$ gcc -v
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/aarch64-redhat-linux/7/lto-wrapper
Target: aarch64-redhat-linux
Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,objc,obj-c++,fortran,ada,go,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --disable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-libsanitizer --enable-gnu-indirect-function --disable-libcilkrts --enable-libatomic --disable-libquadmath --enable-libitm --build=aarch64-redhat-linux
Thread model: posix
gcc version 7.3.1 20180712 (Red Hat 7.3.1-13) (GCC) 

$ mpicc -v
Using built-in specs.
COLLECT_GCC=/usr/bin/gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/aarch64-redhat-linux/7/lto-wrapper
Target: aarch64-redhat-linux
Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,objc,obj-c++,fortran,ada,go,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --disable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-libsanitizer --enable-gnu-indirect-function --disable-libcilkrts --enable-libatomic --disable-libquadmath --enable-libitm --build=aarch64-redhat-linux
Thread model: posix
gcc version 7.3.1 20180712 (Red Hat 7.3.1-13) (GCC) 

• Installation method:
  install.sh
• All flags & options passed to the installer

./install.sh -M /opt/amazon/openmpi

• Output of uname -a:

$ uname -a
Linux ip-10-0-0-25 4.14.232-177.418.amzn2.aarch64 #1 SMP Tue Jun 15 20:58:11 UTC 2021 aarch64 aarch64 aarch64 GNU/Linux

• MPI library being used:

$ which mpicc
/opt/amazon/openmpi/bin/mpicc
$ mpicc -show
gcc -I/opt/amazon/openmpi/include -pthread -Wl,-rpath -Wl,/opt/amazon/openmpi/lib64 -Wl,--enable-new-dtags -L/opt/amazon/openmpi/lib64 -lmpi

• Machine architecture and number of physical cores:

AWS Graviton 2

$ lscpu
Architecture:        aarch64
Byte Order:          Little Endian
CPU(s):              64
On-line CPU(s) list: 0-63
Thread(s) per core:  1
Core(s) per socket:  64
Socket(s):           1
NUMA node(s):        1
Model:               1
BogoMIPS:            243.75
L1d cache:           64K
L1i cache:           64K
L2 cache:            1024K
L3 cache:            32768K
NUMA node0 CPU(s):   0-63
Flags:               fp asimd evtstrm aes pmull sha1 sha2 crc32 atomics fphp asimdhp cpuid asimdrdm lrcpc dcpop asimddp ssbs

• Version of CMake:

$ cmake --version
cmake version 2.8.12.2

To help us debug your issue please explain:

What you were trying to do (and why)

Install OpenCoarrays on AWS Graviton 2 so that I can build and run the PRK Fortran coarray tests.

What happened (include command output, screenshots, logs, etc.)

$ ./install.sh -M /opt/amazon/openmpi
2021-07-12 13:02:07 UTC [     info] __file: /home/jehammond/OpenCoarrays/install.sh
2021-07-12 13:02:07 UTC [     info] __dir: /home/jehammond/OpenCoarrays
2021-07-12 13:02:07 UTC [     info] __base: install
2021-07-12 13:02:07 UTC [     info] __os: Linux
2021-07-12 13:02:07 UTC [     info] __usage: /home/jehammond/OpenCoarrays/install.sh-usage
2021-07-12 13:02:07 UTC [     info] LOG_LEVEL: 6
2021-07-12 13:02:07 UTC [     info] -b (--install-branch):   
2021-07-12 13:02:07 UTC [     info] -c (--with-c):           
2021-07-12 13:02:07 UTC [     info] -C (--with-cxx):         
2021-07-12 13:02:07 UTC [     info] -d (--debug):            0
2021-07-12 13:02:07 UTC [     info] -D (--print-downloader): 
2021-07-12 13:02:07 UTC [     info] -e (--verbose):          0
2021-07-12 13:02:07 UTC [     info] -f (--with-fortran):     
2021-07-12 13:02:07 UTC [     info] -h (--help):             0
2021-07-12 13:02:07 UTC [     info] -i (--install-prefix):   /home/jehammond/OpenCoarrays/prerequisites/installations//
2021-07-12 13:02:07 UTC [     info] -I (--install-version):  
2021-07-12 13:02:07 UTC [     info] -j (--num-threads):      4
2021-07-12 13:02:07 UTC [     info] -l (--list-packages):    0
2021-07-12 13:02:07 UTC [     info] -m (--with-cmake):       
2021-07-12 13:02:07 UTC [     info] -M (--with-mpi):         /opt/amazon/openmpi
2021-07-12 13:02:07 UTC [     info] -n (--no-color):         0
2021-07-12 13:02:07 UTC [     info] -o (--only-download):    0
2021-07-12 13:02:07 UTC [     info] -p (--package):          opencoarrays
2021-07-12 13:02:07 UTC [     info] -P (--print-path):       
2021-07-12 13:02:07 UTC [     info] -r (--prefix-root):      
2021-07-12 13:02:07 UTC [     info] -u (--from-url):         
2021-07-12 13:02:07 UTC [     info] -U (--print-url):        
2021-07-12 13:02:07 UTC [     info] -v (--version):          0
2021-07-12 13:02:07 UTC [     info] -V (--print-version):    
2021-07-12 13:02:07 UTC [     info] -y (--yes-to-all):       0
2021-07-12 13:02:07 UTC [     info] -Z (--bootstrap):        0
2021-07-12 13:02:07 UTC [     info] num_threads="4"
2021-07-12 13:02:07 UTC [     info] opencoarrays_src_dir=/home/jehammond/OpenCoarrays
2021-07-12 13:02:07 UTC [     info] build_path="/home/jehammond/OpenCoarrays"/prerequisites/builds
2021-07-12 13:02:07 UTC [     info] build_script="/home/jehammond/OpenCoarrays"/prerequisites/build.sh
2021-07-12 13:02:08 UTC [     info] Checking whether the directory /home/jehammond/OpenCoarrays/prerequisites/installations/ exists... 
2021-07-12 13:02:08 UTC [     info] yes
2021-07-12 13:02:08 UTC [     info] Checking whether I have write permissions to /home/jehammond/OpenCoarrays/prerequisites/installations/ ... 
2021-07-12 13:02:08 UTC [     info] yes

__________ Please read these instructions carefully before proceeding. ___________
__________________________________________________________________________________
*** Most end users will find it easier to install OpenCoarrays via the native  ***
*** package manager for the target operating system.  Advanced developers will ***
*** find it best to install via CMake.  Please see the OpenCoarrays README.md  ***
*** for a list of supported package installers or for instructions on using    ***
*** CMake to install.  The current script offers a fallback when other methods ***
*** prove infeasible. This script builds any missing prerequisites from source ***
*** and then builds OpenCoarrays from source.  The process might take a few    ***
*** minutes if the script finds all prerequisites or several hours if the      ***
*** script finds no prerequisites. (Run './install.sh --help' without quotes   ***
*** to see the installation options.)  This script traverses the following     ***
*** dependency tree and asks permission to install packages that are not in    ***
*** your PATH, not in the prerequisites/installations subdirectory of the      ***
*** OpenCoarrays source tree, or have insufficiently recent version numbers:   ***

    opencoarrays
    |__ cmake-3.10.0
    |__ mpich-3.2
        |__ gcc-10.1.0
            |__ flex-2.6.0
            |   |__ bison-3.0.4
            |       |__ m4-1.4.17
            |__ gmp
            |__ mpc
            |__ mpfr

*** For a non-interactive installation, relaunch this script with the command  ***
*** './install.sh --yes-to-all' without quotes to instruct the script to       ***
*** assume affirmative answers to all user queries.                            ***

opencoarrays will be installed in /home/jehammond/OpenCoarrays/prerequisites/installations/

What you expected to happen

I expected to see AWS Open-MPI used instead of MPICH. Because the AWS instances I am using have EFA, it is important to use an MPI that supports this. It is possible that I can get MPICH working with the AWS distribution of libfabric but I do not want to mess around with that right now.

Step-by-step reproduction instructions to reproduce the error/bug

1. use AWS Graviton 2
2. git clone https://github.com/sourceryinstitute/OpenCoarrays.git
3. ./install.sh -M /opt/amazon/openmpi

[stale]

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