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sourmash sig extract doesn't respect - for stdin? #3527

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ctb opened this issue Feb 10, 2025 · 0 comments
Open

sourmash sig extract doesn't respect - for stdin? #3527

ctb opened this issue Feb 10, 2025 · 0 comments

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@ctb
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ctb commented Feb 10, 2025

Per @luizirber,

a bit disappointed I had to use /dev/stdin instead of - in sourmash sig extract

for sig in GCF_000006945.2 GCF_000012345.1 GCF_000015665.1 GCF_000182965.3      
GCF_001890705.1 GCF_002251655.1 GCF_021117135.1                                 
do                                                                              
curl -L https://wort.sourmash.bio/v1/view/genomes/${sig} | \                    
pixi exec -s sourmash-minimal sourmash sig extract -k 21 /dev/stdin -o          
${sig}.sig                                                                      
done                                                                            
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