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discuss (lack of) prepared protein search database #637

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ctb opened this issue Jan 17, 2019 · 2 comments
Open

discuss (lack of) prepared protein search database #637

ctb opened this issue Jan 17, 2019 · 2 comments
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doc documentation content or issues

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@ctb
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ctb commented Jan 17, 2019

ref #426, we should adjust doc/databases.md to make it clear that we do not provide prepared protein databases.

Also I personally am quite curious to know if the v2 revindex/LCA database created in #533 will work for protein searches. I'm pretty sure it will in theory, but not sure we do all the necessary things for it to work in practice!
@ctb ctb mentioned this issue Jan 17, 2019
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@ctb ctb mentioned this issue Apr 18, 2020
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ctb commented Apr 18, 2020

The v2 LCA database will support protein searches with little modification - see #947.

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ctb commented Jun 12, 2020

with #1013 we can now provide protein/dayhoff/HP LCA databases, and it seems likely that we will be doing so for GTDB in the near future.

This was referenced Jun 17, 2020
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@bluegenes bluegenes added the doc documentation content or issues label Jun 11, 2021
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