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Hello,

I am Anand, and I mostly develop academic open-source software tools for Genomics and Epi-genomics.

Some of the popular tools I developed are:

  • maftools: A multi-functional, user-friendly software package for somatic variant analysis in cancer-related studies. It is also widely cited (>2000 times) and ranks among the top 100 most downloaded packages from Biocoductor repository.
  • trackplot: A visualization tool to generate publication ready IGV style tracks from within R
  • basegraphics: Data visualization using only base R graphics with complete code and the datasets. I also tweet at baseRgraphics
  • methrix: A package for DNA methylation analysis from whole-genome bisulfite sequencing studies
  • TCGAmutations: An R data package containing ready-to-use, pre-compiled somatic mutations along with the clinical annotations from TCGA cohorts (from Broad Firehose and TCGA MC3 Project)
  • somaticfreq: knowledge-based genotyping of cancer hotspots from the tumor BAM files

If you like what I do or find it useful, consider sponsoring me :)

@PoisonAlien

Get a sponsor :)

Featured work

  1. PoisonAlien/maftools

    Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

  2. PoisonAlien/TCGAmutations

    R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE

  3. CompEpigen/methrix

    An R 📦 for fast and flexible DNA methylation analysis

  4. PoisonAlien/trackplot

    Generate IGV style locus tracks from bigWig files in R

  5. PoisonAlien/somaticfreq

    knowledge-based genotyping of cancer hotspots from the tumor BAM files

  6. PoisonAlien/basegraphics

    Pretty plots using pure base graphics in R

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