You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Should the individual mask bed be a subset of Mappability mask file ?
If I understood correctly, the mappability mask file shows the the valid range of genome sites, which includes mask range for all other samples.
However, in your tutorial, I found that it is not the case.
A lot of sites in VCF mask bed is not include in mappability mask file, why?
Did I misunderstand anything?
No, they're independent. The individual masks gives regions at which the individual has enough data. The mappability mask gives regions in the genome which are generally mappable. The code will then create an intersect.
Dear @stschiff ,
Should the individual mask bed be a subset of Mappability mask file ?
If I understood correctly, the mappability mask file shows the the valid range of genome sites, which includes mask range for all other samples.
However, in your tutorial, I found that it is not the case.
A lot of sites in VCF mask bed is not include in mappability mask file, why?
Did I misunderstand anything?
Best regards,
Sandy
PS: the mask range
The text was updated successfully, but these errors were encountered: