pyyaml-include

An extending constructor of PyYAML: include other YAML files into current YAML document.

In version 2.0, fsspec was introduced. With it, we can even include files by HTTP, SFTP, S3 ...

⚠️ Warning
“pyyaml-include” 2.0 is NOT compatible with 1.0

Install

pip install "pyyaml-include"

Because fsspec was introduced to open the including files since v2.0, an installation can be performed like below, if want to open remote files:

for files on website:

pip install "pyyaml-include" fsspec[http]

for files on S3:
```
pip install "pyyaml-include" fsspec[s3]
```
see fsspec's documentation for more

🔖 Tip
“pyyaml-include” depends on fsspec, it will be installed no matter including local or remote files.

Basic usages

Consider we have such YAML files:

├── 0.yml
└── include.d
    ├── 1.yml
    └── 2.yml

1.yml 's content:
```
name: "1"
```
2.yml 's content:
```
name: "2"
```

To include 1.yml, 2.yml in 0.yml, we shall:

Register a yaml_include.Constructor to PyYAML's loader class, with !inc(or any other tags start with ! character) as it's tag:

import yaml
import yaml_include

# add the tag
yaml.add_constructor("!inc", yaml_include.Constructor(base_dir='/your/conf/dir'))

Use !inc tag(s) in 0.yaml:

file1: !inc include.d/1.yml
file2: !inc include.d/2.yml

Load 0.yaml in your Python program

with open('0.yml') as f:
   data = yaml.full_load(f)
print(data)

we'll get:

{'file1': {'name': '1'}, 'file2': {'name': '2'}}

(optional) the constructor can be unregistered:

del yaml.Loader.yaml_constructors["!inc"]
del yaml.UnSafeLoader.yaml_constructors["!inc"]
del yaml.FullLoader.yaml_constructors["!inc"]

Include in Mapping

If 0.yml was:

file1: !inc include.d/1.yml
file2: !inc include.d/2.yml

We'll get:

file1:
  name: "1"
file2:
  name: "2"

Include in Sequence

If 0.yml was:

files:
  - !inc include.d/1.yml
  - !inc include.d/2.yml

We'll get:

files:
  - name: "1"
  - name: "2"

Advanced usages

Wildcards

File name can contain shell-style wildcards. Data loaded from the file(s) found by wildcards will be set in a sequence.

That is, a list will be returned when including file name contains wildcards. Length of the returned list equals number of matched files:

If 0.yml was:

files: !inc include.d/*.yml

We'll get:

files:
  - name: "1"
  - name: "2"

when only 1 file matched, length of list will be 1
when there are no files matched, an empty list will be returned

We support **, ? and [..]. We do not support ^ for pattern negation. The maxdepth option is applied on the first ** found in the path.

❗ Important

Using the ** pattern in large directory trees or remote file system (S3, HTTP ...) may consume an inordinate amount of time.

There is no method like lazy-load or iteration, all data of found files returned to the YAML doc-tree are fully loaded in memory, large amount of memory may be needed if there were many or big files.

Work with fsspec

In v2.0, we use fsspec to open including files, thus we can include files from many different sources, such as local file system, S3, HTTP, SFTP ...

For example, we can include a file from website in YAML:

conf:
  logging: !inc http://domain/etc/app/conf.d/logging.yml

In such situations, when creating a Constructor constructor, a fsspec filesystem object shall be set to fs argument.

For example, if want to include files from website, we shall:

create a Constructor with a fsspec HTTP filesystem object as it's fs:

import yaml
import fsspec
import yaml_include

http_fs = fsspec.filesystem("http", client_kwargs={"base_url": f"http://{HOST}:{PORT}"})

ctor = yaml_include.Constructor(fs=http_fs, base_dir="/foo/baz")
yaml.add_constructor("!inc", ctor, yaml.Loader)

then, write a YAML document to include files from http://${HOST}:${PORT}:

key1: !inc doc1.yml    # relative path to "base_dir"
key2: !inc ./doc2.yml  # relative path to "base_dir" also
key3: !inc /doc3.yml   # absolute path, "base_dir" does not affect
key3: !inc ../doc4.yml # relative path one level upper to "base_dir"

load it with PyYAML:
```
yaml.load(yaml_string, yaml.Loader)
```

Above YAML snippet will be loaded like:

key1: pared YAML of http://${HOST}:${PORT}/foo/baz/doc1.yml
key2: pared YAML of http://${HOST}:${PORT}/foo/baz/doc2.yml
key3: pared YAML of http://${HOST}:${PORT}/doc3.yml
key4: pared YAML of http://${HOST}:${PORT}/foo/doc4.yml

🔖 Tip
Check fsspec's documentation for more

ℹ️ Note
If fs argument is omitted, a "file"/"local" fsspec filesystem object will be used automatically. That is to say:
data: !inc: foo/baz.yaml
is equivalent to (if no base_dir was set in Constructor()):
data: !inc: file://foo/baz.yaml
and
yaml.add_constructor("!inc", Constructor())
is equivalent to:
yaml.add_constructor("!inc", Constructor(fs=fsspec.filesystem("file")))

Parameters in YAML

As a callable object, Constructor passes YAML tag parameters to fsspec for more detailed operations.

The first argument is urlpath, it's fixed and must-required, either positional or named. Normally, we put it as a string after the tag(eg: !inc), just like examples above.

However, there are more parameters.

in a sequence way, parameters will be passed to python as positional arguments, like *args in python function. eg:
```
files: !inc [include.d/**/*.yaml, {maxdepth: 1}, {encoding: utf16}]
```
in a mapping way, parameters will be passed to python as named arguments, like **kwargs in python function. eg:
```
files: !inc {urlpath: /foo/baz.yaml, encoding: utf16}
```

But the format of parameters has multiple cases, and differs variably in different fsspec implementation backends.

If a scheme/protocol(“http://”, “sftp://”, “file://”, etc.) is defined, and there is no wildcard in urlpath, Constructor will invoke fsspec.open directly to open it. Which means Constructor's fs will be ignored, and a new standalone fs will be created implicitly.

In this situation, urlpath will be passed to fsspec.open's first argument, and all other parameters will also be passed to the function.

For example,
- the YAML snippet
```
files: !inc [file:///foo/baz.yaml, r]
```
  will cause python code like
```
with fsspec.open("file:///foo/baz.yaml", "r") as f:
    yaml.load(f, Loader)
```
- and the YAML snippet
```
files: !inc {urlpath: file:///foo/baz.yaml, encoding: utf16}
```
  will cause python code like
```
with fsspec.open("file:///foo/baz.yaml", encoding="utf16") as f:
    yaml.load(f, Loader)
```
If urlpath has wildcard, and also scheme in it, Constructor will:

Invoke fsspec's open_files function to search, open and load files, and return the results in a list. YAML include statement's parameters are passed to open_files function.
If urlpath has wildcard, and no scheme in it, Constructor will:
1. invoke corresponding fsspec implementation backend's glob method to search files,
2. then call open method to open each found file(s).
urlpath will be passed as the first argument to both glob and open method of the corresponding fsspec implementation backend, and other parameters will also be passed to glob and open method as their following arguments.

In the case of wildcards, what need to pay special attention to is that there are two separated parameters after urlpath, the first is for glob method, and the second is for open method. Each of them could be either sequence, mapping or scalar, corresponds single, positional and named argument(s) in python. For example:
- If we want to include every .yml file in directory etc/app recursively with max depth at 2, and open them in utf-16 codec, we shall write the YAML as below:
```
files: !inc ["etc/app/**/*.yml", {maxdepth: !!int "2"}, {encoding: utf16}]
```
  it will cause python code like:
```
for file in local_fs.glob("etc/app/**/*.yml", maxdepth=2):
    with local_fs.open(file, encoding="utf16") as f:
        yaml.load(f, Loader)
```
- Since maxdepth is the seconde argument after path in glob method, we can also write the YAML like this:
```
files: !inc ["etc/app/**/*.yml", [!!int "2"]]
```
  The parameters for open is omitted, means no more arguments except urlpath is passed.
  
  it will cause python code like:
```
for file in local_fs.glob("etc/app/**/*.yml", 2):
    with local_fs.open(file) as f:
        yaml.load(f, Loader)
```
- The two parameters can be in a mapping form, and name of the keys are "glob" and "open". for example:
```
files: !inc {urlpath: "etc/app/**/*.yml", glob: [!!int "2"], open: {encoding: utf16}}
```
❗ Important
PyYAML sometimes takes scalar parameter of custom constructor as string, we can use a ‘Standard YAML tag’ to ensure non-string data type in the situation.

For example, following YAML snippet may cause an error:
```
files: !inc ["etc/app/**/*.yml", open: {intParam: 1}]
```
Because PyYAML treats {"intParam": 1} as {"intParam": "1"}, which makes python code like fs.open(path, intParam="1"). To prevent this, we shall write the YAML like:
```
files: !inc ["etc/app/**/*.yml", open: {intParam: !!int 1}]
```
where !!int is a ‘Standard YAML tag’ to force integer type of maxdepth argument.

ℹ️ Note
BaseLoader, SafeLoader, CBaseLoader, CSafeLoader do NOT support ‘Standard YAML tag’.

🔖 Tip
maxdepth argument of fsspec glob method is already force converted by Constructor, no need to write a !!int tag on it.
Else, Constructor will invoke corresponding fsspec implementation backend's open method to open the file, parameters beside urlpath will be passed to the method.

Absolute and Relative URL/Path

When the path after include tag (eg: !inc) is not a full protocol/scheme URL and not starts with "/", Constructor tries to join the path with base_dir, which is a argument of Constructor.__init__(). If base_dir is omitted or None, the actually including file path is the path in defined in YAML without a change, and different fsspec filesystem will treat them differently. In local filesystem, it will be cwd.

For remote filesystem, HTTP for example, the base_dir can not be None and usually be set to "/".

Relative path does not support full protocol/scheme URL format, base_dir does not effect for that.

For example, if we register such a Constructor to PyYAML:

import yaml
import fsspec
import yaml_include

yaml.add_constructor(
    "!http-include",
    yaml_include.Constructor(
        fsspec.filesystem("http", client_kwargs={"base_url": f"http://{HOST}:{PORT}"}),
        base_dir="/sub_1/sub_1_1"
    )
)

then, load following YAML:

xyz: !http-include xyz.yml

the actual URL to access is http://$HOST:$PORT/sub_1/sub_1_1/xyz.yml

Flatten sequence object in multiple matched files

Consider we have such a YAML:

items: !include "*.yaml"

If every file matches *.yaml contains a sequence object at the top level in it, what parsed and loaded will be:

items: [
    [item 0 of 1st file, item 1 of 1st file, ... , item n of 1st file, ...],
    [item 0 of 2nd file, item 1 of 2nd file, ... , item n of 2nd file, ...],
    # ....
    [item 0 of nth file, item 1 of nth file, ... , item n of nth file, ...],
    # ...
]

It's a 2-dim array, because YAML content of each matched file is treated as a member of the list(sequence).

But if flatten parameter was set to true, like:

items: !include {urlpath: "*.yaml", flatten: true}

we'll get:

items: [
    item 0 of 1st file, item 1 of 1st file, ... , item n of 1st file,  # ...
    item 0 of 2nd file, item 1 of 2nd file, ... , item n of 2nd file,  # ...
    # ....
    item 0 of n-th file, item 1 of n-th file, ... , item n of n-th file,  # ...
    # ...
]

ℹ️ Note

Only available when multiple files were matched.

Every matched file should have a Sequence object in its top level, or a TypeError exception may be thrown.

Serialization

When load YAML string with include statement, the including files are parsed into python objects by default. That is, if we call yaml.dump() on the object, what dumped is the parsed python object, and can not serialize the include statement itself.

To serialize the statement, we shall first create an yaml_include.Constructor object whose autoload attribute is False:

import yaml
import yaml_include

ctor = yaml_include.Constructor(autoload=False)

then add both Constructor for Loader and Representer for Dumper:

yaml.add_constructor("!inc", ctor)

rpr = yaml_include.Representer("inc")
yaml.add_representer(yaml_include.Data, rpr)

Now, the including files will not be loaded when call yaml.load(), and yaml_include.Data objects will be placed at the positions where include statements are.

continue above code:

yaml_str = """
- !inc include.d/1.yaml
- !inc include.d/2.yaml
"""

d0 = yaml.load(yaml_str, yaml.Loader)
# Here, "include.d/1.yaml" and "include.d/2.yaml" not be opened or loaded.
# d0 is like:
# [Data(urlpath="include.d/1.yaml"), Data(urlpath="include.d/2.yaml")]

# serialize d0
s = yaml.dump(d0)
print(s)
# ‘s’ will be:
# - !inc 'include.d/1.yaml'
# - !inc 'include.d/2.yaml'

# de-serialization
ctor.autoload = True # re-open auto load
# then load, the file "include.d/1.yaml" and "include.d/2.yaml" will be opened and loaded.
d1 = yaml.load(s, yaml.Loader)

# Or perform a recursive opening / parsing on the object:
d2 = yaml_include.load(d0) # d2 is equal to d1

autoload can be used in a with statement:

ctor = yaml_include.Constructor()
# autoload is True here

with ctor.managed_autoload(False):
    # temporary set autoload to False
    yaml.full_load(YAML_TEXT)
# autoload restore True automatic

Include JSON or TOML

We can include files in different format other than YAML, like JSON or TOML -- custom_loader is for that.

📑 Example
For example:

import json
import tomllib as toml
import yaml
import yaml_include

# Define loader function
def my_loader(urlpath, file, Loader):
    if urlpath.endswith(".json"):
        return json.load(file)
    if urlpath.endswith(".toml"):
        return toml.load(file)
    return yaml.load(file, Loader)

# Create the include constructor, with the custom loader
ctor = yaml_include.Constructor(custom_loader=my_loader)

# Add the constructor to YAML Loader
yaml.add_constructor("!inc", ctor, yaml.Loader)

# Then, json files will can be loaded by std-lib's json module, and the same to toml files.
s = """
json: !inc "*.json"
toml: !inc "*.toml"
yaml: !inc "*.yaml"
"""

yaml.load(s, yaml.Loader)

Develop

clone the repo:

git clone https://github.com/tanbro/pyyaml-include.git
cd pyyaml-include

create then activate a python virtual-env:
```
python -m venv .venv
.venv/bin/activate
```
install development requirements and the project itself in editable mode:
```
pip install -r requirements.txt
```

Now you can work on it.

Test

read: tests/README.md

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README.md

README.md

pyyaml-include

Install

Basic usages

Include in Mapping

Include in Sequence

Advanced usages

Wildcards

Work with fsspec

Parameters in YAML

Absolute and Relative URL/Path

Flatten sequence object in multiple matched files

Serialization

Include JSON or TOML

Develop

Test

Files

README.md

Latest commit

History

README.md

File metadata and controls

pyyaml-include

Install

Basic usages

Include in Mapping

Include in Sequence

Advanced usages

Wildcards

Work with fsspec

Parameters in YAML

Absolute and Relative URL/Path

Flatten sequence object in multiple matched files

Serialization

Include JSON or TOML

Develop

Test