Allele.ctg.table for genome with no annotation

[pezhmansafdari]

Hi,

I have a fresh highly polymorphic denovo assembly and I am not planning on doing annotation before I phase the genome. Is there a way to create Allele.ctg.table without annotation (CDS and GFF3) files?

BR,
Pezhman

[tangerzhang]

Yes, here is an alternative approach to generate the Allele.ctg.table without annotation:
#16

[pezhmansafdari]

Thanks