DATA_FILES

UPDATED --- 10/10/12

This is the necessary contents of the SOER1000genes/data/ folder for the required tools. Some files have been ommited or abbreviated to maintain legibility. It is implied the reader will have some knowledge as to the required files.

data/
├── 1kg
│   ├── impute2
│   │   ├── ALL_1000G_phase1integrated_v3_chr1-22-x_impute.hap
│   │   ├── ALL_1000G_phase1integrated_v3_chr1-22-x_impute.legend
│   │   ├── ALL_1000G_phase1integrated_v3_impute.tgz
│   │   ├── ALL_1000G_phase1integrated_v3.sample
│   │   ├── genetic_map_chr1-22-x_combined_b37.txt
│   └── vcf
│       ├── ALL.subset.vcf
│       ├── ALL.wgs.phase1_release_v2.20101123.snps_indels_sv.sites.vcf
├── dbSNP.vcf.gz
├── dbSNP.vcf.gz.tbi
└── evs
    └── esp
        ├── chromosomes
        │   ├── ESP6500.ALL.snps.vcf.gz
        ├── ESP6500.ALL.snps.vcf.gz
        └── ESP6500.ALL.snps.vcf.gz.tbi

6 directories, 80 files

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