| layout | title |
|---|---|
page |
Key Infomation |
Welcome to the Bioinformatics Practical Handbook for BABS3291 Genes, Genome and Evolution. The material in this handbook is designed to help guide you through the practical.
| Groups | Research Topic | GSE | Chromosome | First name | Last name |
|---|---|---|---|---|---|
| Group 1 | Neuroblastoma | GSE202634 | chr1_chr3 | Aleksandar | Blagojevich |
| chr4_chr7 | Sukriti | Joshi | |||
| chr8_chr12 | Sarah | Assi | |||
| chr13_chr16 | Ella | Van Wensveen | |||
| Group 2 | Parkinson's Disease | GSE125239 | chr1_chr3 | Eva | Scoufis |
| chr4_chr7 | Yingjian | Wang | |||
| chr8_chr12 | Mali | Woods | |||
| chr13_chr16 | Rola | Wael Foud Zohairy Zohairy | |||
| chr17_chr22 | Ceyda | Kula | |||
| Group 3 | Liver Alcoholic | GSE155907 | chr1_chr3 | Emma | Redd |
| chr4_chr7 | Hanyuan | Liu | |||
| chr8_chr12 | James | Wang | |||
| chr13_chr16 | Rafael | Colinares | |||
| chr17_chr22 | Anju | Harada | |||
| Group 4 | Neural differentiation | GSE123753 | chr1_chr3 | Nandan | Dhanekula |
| chr4_chr7 | Ziggi | Zikmann | |||
| chr8_chr12 | Neysa | Njo | |||
| chr13_chr16 | Ellen | Breynard | |||
| Group 5 | Alzheimers and aging | GSE104704 | chr1_chr3 | Sara | Laker |
| chr4_chr7 | Isabelle | Duff | |||
| chr8_chr12 | Olivia | Reeves | |||
| chr13_chr16 | Kai Kam | Chiu | |||
| Group 6 | COVID-19 | GSE152418 | chr1_chr3 | Zihan | Zeng |
| chr4_chr7 | Jasmin | Yip | |||
| chr8_chr12 | Daniel | Vergov | |||
| chr13_chr16 | Mark | Burgess | |||
| Lupus | Group 7 | GSE72420 | chr1_chr3 | Sakun | Munasinghe |
| chr4_chr7 | Iris | Chang | |||
| chr8_chr12 | Andreas | Bartnitzky | |||
| chr13_chr16 | James | Hilton | |||
| Lymphoma | Group 8 | GSE159808 | chr1_chr3 | Patricia | Chang |
| chr4_chr7 | Hugh | Benz | |||
| chr8_chr12 | Thomas | Altamura | |||
| chr13_chr16 | Marta | Stojnic | |||
| chr17_chr22 | Jessica | Gu | |||
| Myelodysplastic syndrome | Group 9 | GSE65349 | chr1_chr3 | Mengning | Zhang |
| chr4_chr7 | Mariya | Skripnikova | |||
| chr8_chr12 | Junhee | Kim | |||
| chr13_chr16 | Jon | Mann |
Exploratory text
$ Command-line examples will be given in their own boxes, starting with "$".
$ Optional parameters will be given [in square brackets].
Terminal output will be in the same format, without the leading $.
Functions used within exploratory text
Questions/Challenges
You will find questions and extra activities scattered throughout the instructions. These are not assessed but will help you to understand the processes and associated theory lectures.
These contain general reusable hints and tips rather than specific topic commands etc.
NOTE: It is recommended that you also use a fixed width font (e.g. Consolas) and colour formatting when documenting code in your own lab books to help it stand out from other thoughts/instructions.